DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and grin2bb

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001121809.1 Gene:grin2bb / 559976 ZFINID:ZDB-GENE-061207-27 Length:1770 Species:Danio rerio


Alignment Length:645 Identity:115/645 - (17%)
Similarity:214/645 - (33%) Gaps:233/645 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SPMNFYRNIMQLLYE------SVD--TMIVQLVLVELGRPR---RIAGPRTHNLLLVDSLDALLD 110
            :|....|.:|.:.:|      |.|  .|..:||::.|.:.|   |:.  :..|..|.........
Zfish   408 NPNEVLRYLMNVTFEGRNLSFSEDGFQMHPKLVIILLNKERQYERVG--KWENGSLAMKYHVWPR 470

  Fly   111 IEIHTYTAQSDTSEYYFIFLQQRDALIPHDMQGVFAYCWRHQLINCNVMTQSSGGQVLLHTYFPY 175
            .|:::...:.:......:.|::...:|..|:..:...|.|:.:                      
Zfish   471 FELYSDAEEREDDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTV---------------------- 513

  Fly   176 APGQCNDSQPTRINMFLGESWKHRDYFPSKLHNLNGCPLIVLARKVSPFLDLDEG---QRELRGL 237
                     |.|..:              ||.||.|                |.|   :|..:|.
Zfish   514 ---------PCRKQL--------------KLQNLTG----------------DSGIYIKRCCKGF 539

  Fly   238 EGRLLQELSRRMNFSIQF----SGLQDQLKNRTTWTEKQLLQKLVQERI---AHLAIGYV---RK 292
            ...:|:::::.:.|:...    :|...: |...||      ..:|.|.:   ||:|:|.:   .:
Zfish   540 CIDILKKIAKSVKFTYDLYLVTNGKHGK-KINGTW------NGMVGEVVLKNAHMAVGSLTINEE 597

  Fly   293 RIQYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSFPFQALTWICLVFSFLSIS--------- 348
            |.:......|    :....:..::..::...|...:..||.|..|:.:....|.:|         
Zfish   598 RSEVIDFSVP----FIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEY 658

  Fly   349 --------CLALLHXRGAGDRLALVLAVY-----AASLGLPIDPPERPSLQLLFASWLIFGLIVR 400
                    |||... .| |....:..|::     ..:..:|:..|:..:.:::.:.|..|.:|..
Zfish   659 FSPVGYNRCLADGREPG-GPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFL 722

  Fly   401 SMYSA-LLFFILRYHLHQRLPGNLQD--LTHGD-------YAAVMGRTTLQDLR----EVPSLQD 451
            :.|:| |..|:::.....::.| |.|  ..|.:       :..|...:|.:::|    |:.|...
Zfish   723 ASYTANLAAFMIQEEYVDQVTG-LSDKKFQHPNDFSPPFRFGTVPNGSTERNIRNNYKEMHSYMT 786

  Fly   452 LLGLKSVIVTSEREEEVLRTL----------DRCTLR------EGA-----GSHPLF----FGL- 490
            ....|:|       .|.|.:|          |...|.      ||.     ||..:|    :|: 
Zfish   787 SFHQKNV-------NEALHSLKSGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIA 844

  Fly   491 ISQD---------ALLHLTQRGHRAGAYHIIPQDVLEQQLAIYL------QKHSHLASHLDHLVM 540
            |.:|         |:|.|...|.            :|:..|::|      :|:..::|.||    
Zfish   845 IQKDSGWKRAVDLAILQLFGDGE------------MEELEALWLTGICHNEKNEVMSSQLD---- 893

  Fly   541 SIRSVGLVHHWAGQMASERYFRSRFLYREKRIRQPDLWAVYILTAGLYLLSLVVFICELL 600
                   |.:.||                         ..|:|.|.: .|||:.||.|.|
Zfish   894 -------VDNMAG-------------------------VFYMLGAAM-ALSLITFIAEHL 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
grin2bbNP_001121809.1 PBP1_iGluR_NMDA_NR2 107..470 CDD:107373 14/63 (22%)
ANF_receptor 138..442 CDD:279440 9/33 (27%)
PBP2_iGluR_NMDA_Nr2 482..882 CDD:270436 83/492 (17%)
Lig_chan 636..908 CDD:278489 59/328 (18%)
NMDAR2_C 919..1770 CDD:287527 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591415
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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