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Protein Alignment Ir7g and Gria1

DIOPT Version :9

Sequence 1:	NP_001368933.1	Gene:	Ir7g / 31694	FlyBaseID:	FBgn0029968	Length:	607	Species:	Drosophila melanogaster
Sequence 2:	NP_113796.1	Gene:	Gria1 / 50592	RGDID:	621531	Length:	907	Species:	Rattus norvegicus

Alignment Length:	455	Identity:	81/455 - (17%)
Similarity:	158/455 - (34%)	Gaps:	117/455 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly   213 PLIVLARKVSPFLDLDEGQRELRGLEGRLLQELSRRMNFSIQFSGLQD---QLKNRTTWTEKQLL 274
            |.::|.:..:.|    ||.....|....|..|:::.:.:|.:...:.|   ..::..|.....::
  Rat   418 PYVMLKKNANQF----EGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMV 478

  Fly   275 QKLVQER----IAHLAIGYVRKR-IQYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSF--PF 332
            .:||..|    :|.|.|..||:. |.::.      |..|..:  .:::.....:...::||  |.
  Rat   479 GELVYGRADVAVAPLTITLVREEVIDFSK------PFMSLGI--SIMIKKPQKSKPGVFSFLDPL 535

  Fly   333 QALTWICLVFSFLSISCLALLHXR--------------------------GAGDRLALVLAVYAA 371
            ....|:|:||:::.:|.:..|..|                          |..:.|...|..:..
  Rat   536 AYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQ 600

  Fly   372 SLGLPIDPPERPSLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLPGNLQDL---THGDYAA 433
            . |..|. |...|.:::...|..|.||:.|.|:|.|...|..........:.:||   |...|..
  Rat   601 Q-GCDIS-PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGT 663

  Fly   434 VMGRTTLQDLREVPSLQDLLGLKSVIVTSEREEEVLRTLDRCTLREGAGSHPLFFGLISQDALLH 498
            :...:|.:..|           :|.|...|:....:::           :.|..|...:::.::.
  Rat   664 LEAGSTKEFFR-----------RSKIAVFEKMWTYMKS-----------AEPSVFVRTTEEGMIR 706

  Fly   499 LTQ-RGHRAGAYHIIPQDVLEQQ----------------LAIYLQKHSHLASHLDHLVMSIRSVG 546
            :.: :|..|........:.:||:                ..|...|.|.|.:.::..|:.:...|
  Rat   707 VRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQG 771

  Fly   547 LVHHWAGQMASERYFRSRFLY--------------REKRIRQPDLWAV-YILTAGLYLLSLVVFI 596
            |:..          .::::.|              :...:...::..| |||..||.|..||..|
  Rat   772 LLDK----------LKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALI 826

Fly 597 596
Rat 827 826

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.