DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and gria1b

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:771 Identity:136/771 - (17%)
Similarity:252/771 - (32%) Gaps:247/771 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VTSLLNFESMKYIGAQTQAASINHHVAQALRVFIEDFYQRIAPAFIVVLSC---RRPSPMNFY-- 62
            ||| :||:::      |:||.:.         .|:|...:  ..|.::|.|   |..|.:|..  
Zfish   171 VTS-INFDTL------TEAAFLK---------AIQDLDNK--KEFKIILDCELERLNSILNLIAA 217

  Fly    63 --RNIMQLLYESVDTMIVQLVLVELGRPRRIAGPRTHNLLLVDSLDALLDIEIHTYTAQSDTSEY 125
              :|:....|...:...:.|.|.|.    |..|.......|::          :|....|.|.:.
Zfish   218 QKKNLKNYHYILANLGFLDLNLTEF----RKGGANVTGFQLMN----------YTNPTVSRTIQD 268

  Fly   126 YFIFLQQRDALIP-----------HDMQGVFAYCW---RHQLINCNVMTQSSGGQVLLHTYFPYA 176
            :..| ..:|...|           :|...|.|..:   |.|.|  ::..:.:.|:.|.:...|:.
Zfish   269 WLEF-DSKDLKSPKRRLKYTGALTYDGVTVMATAFQNLRKQRI--DISRRGNAGECLANPPAPWG 330

  Fly   177 PG-------------------QCNDSQPTRIN-----MFLGES-------WKHRDYFPS------ 204
            .|                   |.|| :..|.|     |..|.|       |..|:.:.|      
Zfish   331 QGIDIQRALQQVQFEGLTGHVQFND-KGHRTNFTVSVMEFGPSGPKKVGYWNQREKYVSTATYSN 394

  Fly   205 ---KLHNLNGCPLIVLARKVSPFLDLDEGQRELRG---LEG---RLLQELSRRMNFSIQFSGLQD 260
               :...|.....:|.....:|::.|.:...:|.|   .||   .|..|:::.:.:|.:...:.|
Zfish   395 MLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLVGNDKYEGYCVELAAEIAKHVGYSYRLELVGD 459

  Fly   261 ---QLKNRTTWTEKQLLQKLVQER----IAHLAIGYVRKR-IQYATNLTPVFPHYSNRVVGCLLL 317
               ..::..|.....::.:||..:    :|.|.|..||:. |.::.      |..|..:  .:::
Zfish   460 GKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSK------PFMSLGI--SIMI 516

  Fly   318 NAHNLTSLEIWSF--PFQALTWICLVFSFLSISCLALLHXR------------------------ 356
            .....:...::||  |.....|:|:||:::.:|.:..|..|                        
Zfish   517 KKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHADDEEETADQQNQNQPP 581

  Fly   357 -----------------------------GAGDRLALVLAVYAASLGLPIDPPERPSLQLLFASW 392
                                         |..:.|...|..:... |..|. |...|.:::...|
Zfish   582 SPEPNQSPNQSQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQQ-GCDIS-PRSLSGRIVGGVW 644

  Fly   393 LIFGLIVRSMYSALLFFILRYHLHQRLPGNLQDL---THGDYAAVMGRTTLQDLREVPSLQDLLG 454
            ..|.||:.|.|:|.|...|..........:.:||   |...|..:.|.:|.:..|          
Zfish   645 WFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDGGSTKEFFR---------- 699

  Fly   455 LKSVIVTSEREEEVLRTLDRCTLREGAGSHPLFFGLISQDALLHLTQ-RGHRAGAYHIIPQDVLE 518
             :|.|...|:....:::           :.|..|...:.:.::.:.: :|..|........:.:|
Zfish   700 -RSKIAVFEKMWSYMKS-----------AEPTVFVKTTDEGVVRVRKSKGKYAYLLESTMNEYIE 752

  Fly   519 QQ----------------LAIYLQKHSHLASHLDHLVMSIRSVGLVHHWAGQMASERYFRSRFLY 567
            |:                ..:...|.|.|.:.::..|:.:...||:..          .::::.|
Zfish   753 QRKPCDTMKVGGNLDSKGYGVATPKGSALRNPVNLAVLKLNEQGLLDK----------LKNKWWY 807

  Fly   568 --------------REKRIRQPDLWAV-YILTAGLYLLSLVVFI--C--ELLASRR 604
                          :...:...::..| |||..||.|..||..:  |  ..:.|||
Zfish   808 DKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALVEFCYKSRIESRR 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 50/251 (20%)
ANF_receptor 41..368 CDD:279440 45/232 (19%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 71/449 (16%)
Lig_chan 536..842 CDD:278489 50/339 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591492
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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