DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and GluRIA

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:438 Identity:82/438 - (18%)
Similarity:142/438 - (32%) Gaps:133/438 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 GLEGRLLQ--------------ELSRRMNFSIQFS--GLQDQLKNRTTWTEK--QLLQKLVQERI 282
            |:.|.|::              |..|.::||..|.  |:...:|.....|..  ..|..|.||..
  Fly   550 GMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVFSFLNPLSQEIW 614

  Fly   283 AHLAIGYVRKRIQYATNLTPVFPHYSNRVV-----------------GCLLL--NAH-------N 321
            ..:.:.||  .:.:.......||.|..|:|                 |..|.  .||       .
  Fly   615 ISVILSYV--GVSFVLYFVTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSEPQAHVPPVPPNE 677

  Fly   322 LTSLEIWSFPFQALTWICLVFSFLSISCLALLHXRGAGDRLALVLAVYAASLGLPIDPPERPSLQ 386
            .|.|.  ||      |..|. :|:...|                          .|.||.... :
  Fly   678 FTMLN--SF------WYSLA-AFMQQGC--------------------------DITPPSIAG-R 706

  Fly   387 LLFASWLIFGLIVRSMYSALLFFIL---RYHLHQRLPGNLQDLTHGDYAAVMGRTTLQDLREVPS 448
            :..|.|..|.:|:.|.|:|.|...|   |.....:.|.:|...|..:|..::..:|.:..|    
  Fly   707 IAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFR---- 767

  Fly   449 LQDLLGLKSVI--VTSEREEEVLRTLDR--CTLREGAGSHPLFFGLISQDALLHLTQRGHRAGAY 509
             :..:||.:.:  ..:..:...:.|.|.  ..:|:..|.:.|   |:......::..|.      
  Fly   768 -RSQIGLHNKMWEYMNANQHHSVHTYDEGIRRVRQSKGKYAL---LVESPKNEYVNARP------ 822

  Fly   510 HIIPQDVLE-------QQLAIYLQKHSHLASHLDHLVMSIRSVG----LVHHWAGQMASERYFRS 563
               |.|.::       :...:.....|.|...|:..|::::..|    :.:.|        :|..
  Fly   823 ---PCDTMKVGRNIDTKGFGVATPIGSPLRKRLNEAVLTLKENGELLRIRNKW--------WFDK 876

  Fly   564 RFLYREKRIRQPDLWAV-------YILTAGLYLLSLVVFICELLASRR 604
            .....::....|:..::       |||..|| ||:::|.|.|.....:
  Fly   877 TECNLDQETSTPNELSLSNVAGIYYILIGGL-LLAVIVAIMEFFCRNK 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375
ANF_receptor 53..434 CDD:279440
PBP2_iGluR_AMPA 477..879 CDD:270433 71/391 (18%)
Lig_chan 612..907 CDD:278489 61/357 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462555
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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