DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and GRIA1

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:455 Identity:81/455 - (17%)
Similarity:158/455 - (34%) Gaps:117/455 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 PLIVLARKVSPFLDLDEGQRELRGLEGRLLQELSRRMNFSIQFSGLQD---QLKNRTTWTEKQLL 274
            |.::|.:..:.|    ||.....|....|..|:::.:.:|.:...:.|   ..::..|.....::
Human   428 PYVMLKKNANQF----EGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMV 488

  Fly   275 QKLVQER----IAHLAIGYVRKR-IQYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSF--PF 332
            .:||..|    :|.|.|..||:. |.::.      |..|..:  .:::.....:...::||  |.
Human   489 GELVYGRADVAVAPLTITLVREEVIDFSK------PFMSLGI--SIMIKKPQKSKPGVFSFLDPL 545

  Fly   333 QALTWICLVFSFLSISCLALLHXR--------------------------GAGDRLALVLAVYAA 371
            ....|:|:||:::.:|.:..|..|                          |..:.|...|..:..
Human   546 AYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQ 610

  Fly   372 SLGLPIDPPERPSLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLPGNLQDL---THGDYAA 433
            . |..|. |...|.:::...|..|.||:.|.|:|.|...|..........:.:||   |...|..
Human   611 Q-GCDIS-PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGT 673

  Fly   434 VMGRTTLQDLREVPSLQDLLGLKSVIVTSEREEEVLRTLDRCTLREGAGSHPLFFGLISQDALLH 498
            :...:|.:..|           :|.|...|:....:::           :.|..|...:::.::.
Human   674 LEAGSTKEFFR-----------RSKIAVFEKMWTYMKS-----------AEPSVFVRTTEEGMIR 716

  Fly   499 LTQ-RGHRAGAYHIIPQDVLEQQ----------------LAIYLQKHSHLASHLDHLVMSIRSVG 546
            :.: :|..|........:.:||:                ..|...|.|.|.:.::..|:.:...|
Human   717 VRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQG 781

  Fly   547 LVHHWAGQMASERYFRSRFLY--------------REKRIRQPDLWAV-YILTAGLYLLSLVVFI 596
            |:..          .::::.|              :...:...::..| |||..||.|..||..|
Human   782 LLDK----------LKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALI 836

  Fly   597  596
            Human   837  836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385
ANF_receptor 47..382 CDD:279440
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 71/414 (17%)
Lig_chan 548..827 CDD:278489 50/312 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156057
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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