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Protein Alignment Ir7g and Grin2a

DIOPT Version :9

Sequence 1:	NP_001368933.1	Gene:	Ir7g / 31694	FlyBaseID:	FBgn0029968	Length:	607	Species:	Drosophila melanogaster
Sequence 2:	NP_036705.3	Gene:	Grin2a / 24409	RGDID:	2737	Length:	1464	Species:	Rattus norvegicus

Alignment Length:	456	Identity:	83/456 - (18%)
Similarity:	158/456 - (34%)	Gaps:	148/456 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly   241 LLQELSRRMNFSIQF----SGLQDQLKNRTTWTEKQLLQKLVQERIAHLAIGYV---RKRIQYAT 298
            :|::|||.:.|:...    :|...: |....|  ..::.::|.:| |.:|:|.:   .:|.:...
  Rat   463 ILKKLSRTVKFTYDLYLVTNGKHGK-KVNNVW--NGMIGEVVYQR-AVMAVGSLTINEERSEVVD 523

  Fly   299 NLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSFPFQALTWICLVFSFLSISCLALLHXR-----GA 358
            ...|    :....:..::..::...|...:..||.|..|:.:....|.:|.:|:....     |.
  Rat   524 FSVP----FVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLIVSAIAVFVFEYFSPVGY 584

  Fly   359 GDRLALVLAVYAASL----------------GLPIDPPERPSLQLLFASWLIFGLIVRSMYSA-L 406
            ...||...|.:..|.                .:|:..|:..:.:::.:.|..|.:|..:.|:| |
  Rat   585 NRNLAKGKAPHGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANL 649

  Fly   407 LFFILRYHLHQRLPGNLQD----LTHGDYA------AVMGRTTLQDLR-EVPSLQDLL------G 454
            ..|:::.....::.| |.|    ..| ||:      .|...:|.:::| ..|.:...:      |
  Rat   650 AAFMIQEEFVDQVTG-LSDKKFQRPH-DYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRG 712

  Fly   455 LKSVIVTSEREEEVLRTLDRCTLR------EGA-----GSHPLF----FGLISQD---------- 494
            ::..:|:.:..:......|...|.      ||.     ||..:|    :|:..|.
  Rat   713 VEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDL 777

  Fly   495 ALLHLTQRGHRAGAYHIIPQDVLEQQLAIYL------QKHSHLASHLDHLVMSIRSVGLVHHWAG 553
            |||.....|.            :|:...::|      :|:..::|.||           :.:.||
  Rat   778 ALLQFVGDGE------------MEELETLWLTGICHNEKNEVMSSQLD-----------IDNMAG 819

  Fly   554 QMASERYFRSRFLYREKRIRQPDLWAVYILTAGLYLLSLVVFICELL------------ASRRAG 606
                                      |:.:.|....|||:.||.|.|            .|.|.|
  Rat   820 --------------------------VFYMLAAAMALSLITFIWEHLFYWKLRFCFTGVCSDRPG 858

  Fly   607 L 607
            |
  Rat   859 L 859

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.