DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and Grik4

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:611 Identity:128/611 - (20%)
Similarity:211/611 - (34%) Gaps:192/611 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 GPRTHNLLLVDSLDALLDIEIHTYTAQSDTSEYYFIFLQQRDALIPHDMQGVFAYCWRH--QLIN 155
            ||...:.||.|::.|::       ||..:.:.      .|...:.|  :....|..|:|  .|:|
  Rat   300 GPALSSALLFDAVYAVV-------TAVQELNR------SQEIGVKP--LSCGSAQIWQHGTSLMN 349

  Fly   156 CNVMTQSSGGQVLLHTYFPYAPGQCNDSQPTRINMFL--------------------GESWKHRD 200
            ...|.:..|  :..|..|        :|:..|.|..|                    |.|...|.
  Rat   350 YLRMVELEG--LTGHIEF--------NSKGQRSNYALKILQFTRNGFRQIGQWHVAEGLSMDSRL 404

  Fly   201 YFPSKLHNLNGCPLIVLARKVSPFLDLDEGQRELRG---LEG---RLLQELSR--RMNFSIQF-- 255
            |..:...:|....|:|.....:|:|.|....:::.|   .||   .:|:||:.  |.|:.|:.  
  Rat   405 YASNISDSLFNTTLVVTTILENPYLMLKGNHQDMEGNDRYEGFCVDMLKELAEILRFNYKIRLVG 469

  Fly   256 SGLQDQLKNRTTWTEK--QLLQKLVQERIAHLAIGYVRKRIQYATNLTPVFPHYSNRVVG-CLLL 317
            .|:....:...|||..  :|:.:.....:|.|.|...|:::   .:.:..|     ..:| .:|.
  Rat   470 DGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKV---IDFSKPF-----MTLGISILY 526

  Fly   318 NAHNLTSLEIWSF--PFQALTWICLVFSFLSISCLALLHXR-----------GAGDRLALVLAVY 369
            ..|.......:||  ||....|:.::.::|::||:..|..|           .|..|..|::..|
  Rat   527 RVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQY 591

  Fly   370 AA--SLGLPID---------PPERPSLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLP--- 420
            :.  ||..|:.         .|...|.:.:...|..|.||:.|.|:|.|...|..   ||:.   
  Rat   592 SLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTV---QRMEVPI 653

  Fly   421 ---GNLQDLTHGDYAAVMG---RTTLQDLR---------EVPSLQDLLGLKSVIVTSEREEEVLR 470
               .:|.|.|..:|..:.|   .|..|:.|         .:.|.|..:.:||.      ||.:.|
  Rat   654 ESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMYSKQPSVFVKST------EEGIAR 712

  Fly   471 TLD------------------RCTLREGAGSHPLFFGLISQDALLHLTQRGHRAGAYHIIPQDVL 517
            .|:                  .|.|.:..|.               |..:|:..|    :|...:
  Rat   713 VLNSNYAFLLESTMNEYYRQRNCNLTQIGGL---------------LDTKGYGIG----MPVGSV 758

  Fly   518 ---EQQLAI-YLQKHSHLASHLDHLVMSIRSVGLVHHW--AGQMASERYFRSRFLYREKRIRQPD 576
               |..||| .||:::.|..             |...|  .|:...|...|::.|..|.      
  Rat   759 FRDEFDLAILQLQENNRLEI-------------LKRKWWEGGKCPKEEDHRAKGLGMEN------ 804

  Fly   577 LWAVYILTAGLYLLSLVVFICELLAS 602
                   ..|::    ||.||.|:.:
  Rat   805 -------IGGIF----VVLICGLIVA 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822 25/126 (20%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 89/418 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349682
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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