DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and Grin2c

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:440 Identity:80/440 - (18%)
Similarity:147/440 - (33%) Gaps:162/440 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 APAFIVVLSCR-RPSPMN-----FYRNIMQLLYESVD------TMIVQ--LVLVELGRPR--RIA 92
            |||.    .|| .|.|::     |||:::.:.:|..|      ..:||  :|::.|.|.|  .:.
Mouse   374 APAG----DCRSHPGPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVQPTMVVIALNRHRLWEMV 434

  Fly    93 GPRTHNLLLV---------DSLDALLDIEIHTYTAQSDTSEYYFIFLQQRD----ALIPHDMQGV 144
            |...|.:|.:         .||..::|.. |...|..:  |..|:.::..|    ..:|:.:.  
Mouse   435 GRWDHGVLYMKYPVWPRYSTSLQPVVDSR-HLTVATLE--ERPFVIVESPDPGTGGCVPNTVP-- 494

  Fly   145 FAYCWRHQLINCNVMTQSSGGQVLLHTY-----FPY----APGQCNDSQPTRINMFLGESWKHRD 200
               |.|          ||:      ||:     .||    ..|.|.|.                 
Mouse   495 ---CRR----------QSN------HTFSSGDITPYTKLCCKGFCIDI----------------- 523

  Fly   201 YFPSKLHNLNGCPLIVLARKVSPFLDL------DEGQRELRGLEGRLLQEL-SRRMNFSIQFSGL 258
                         |..||:.|....||      ..|:| :||:...::.|: .:|.:.:|....:
Mouse   524 -------------LKKLAKVVKFSYDLYLVTNGKHGKR-VRGVWNGMIGEVYYKRADMAIGSLTI 574

  Fly   259 QDQLKNRTTWTEKQLLQKLVQERIAHLAIGYVRKRIQYATNLTPVFPHYSNRVVGCLLLNAHNLT 323
            .::                 :..|...::.:|...|                  ..::..::...
Mouse   575 NEE-----------------RSEIIDFSVPFVETGI------------------SVMVARSNGTV 604

  Fly   324 SLEIWSFPFQALTWI-----CL------VFSFLSISCLA----LLHXRGAG------DRLALVLA 367
            |...:..|:....|:     ||      ||.|...|.::    |...:.:|      .:...:|.
Mouse   605 SPSAFLEPYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQNLTKGKKSGGPSFTIGKSVWLLW 669

  Fly   368 VYAASLGLPIDPPERPSLQLLFASWLIFGLIVRSMYSALL--FFILRYHL 415
            ....:..:||:.|...:.:::...|..|.:|..:.|:|.|  |.|...::
Mouse   670 ALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYI 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601 21/75 (28%)
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 56/348 (16%)
NMDAR2_C 905..>980 CDD:371139
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846621
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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