DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7g and Gria2

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:547 Identity:98/547 - (17%)
Similarity:172/547 - (31%) Gaps:180/547 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VVLSCRRPSPMNFYRNIMQLLYESVDTMIV--------QLVLVELG------RPRRIAGPRTHNL 99
            |:|.|.|..           :.:.||.:|.        ..::..||      ...:..|......
Mouse   207 VILDCERDK-----------VNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGANVSGF 260

  Fly   100 LLVDSLDALLDIEIHTYT---------AQSDTSEYYFIFLQQRDALIPHDMQGVFAYCWRH---Q 152
            .:||..|:|:...|..::         |.:.|.:|        .:.:.:|...|....:|:   |
Mouse   261 QIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKY--------TSALTYDAVQVMTEAFRNLRKQ 317

  Fly   153 LINCNVMTQSSGGQVLLHTYFPYAPG----------QCN--------DSQPTRINMFLG------ 193
            .|  .:..:.:.|..|.:...|:..|          |..        |....|||..:.      
Mouse   318 RI--EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKT 380

  Fly   194 ------ESWKHRD-------YFPS--KLHNLNGCPLIVLARKVSPFL------DLDEGQRELRGL 237
                  ..|...|       ..||  ....|....::|.....||::      ::.||.....|.
Mouse   381 NGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPYVMMKKNHEMLEGNERYEGY 445

  Fly   238 EGRLLQELSRRMNFSIQFSGLQD---QLKNRTTWTEKQLLQKLVQER----IAHLAIGYVRKR-I 294
            ...|..|:::...|..:.:.:.|   ..::..|.....::.:||..:    ||.|.|..||:. |
Mouse   446 CVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVI 510

  Fly   295 QYATNLTPVFPHYSNRVVGCLLLNAHNLTSLEIWSF--PFQALTWICLVFSFLSISCLALLHXR- 356
            .::.      |..|..:  .:::.....:...::||  |.....|:|:||:::.:|.:..|..| 
Mouse   511 DFSK------PFMSLGI--SIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRF 567

  Fly   357 -------------------------GAGDRLALVLAVYAASLGLPIDPPERPSLQLLFASWLIFG 396
                                     |..:.|...|..:... |..|. |...|.:::...|..|.
Mouse   568 SPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQ-GCDIS-PRSLSGRIVGGVWWFFT 630

  Fly   397 LIVRSMYSALLFFILRYHLHQRLPGNLQDLTHGDYAAVMGRTTLQDLREVPSLQDLLGLKSVIVT 461
            ||:.|.|:|.|...|                          |..:.:..:.|.:||         
Mouse   631 LIIISSYTANLAAFL--------------------------TVERMVSPIESAEDL--------- 660

  Fly   462 SEREEEVLRTLDRCTLREGAGSHPLFF 488
            |::.|....|||       :||...||
Mouse   661 SKQTEIAYGTLD-------SGSTKEFF 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 34/211 (16%)
PBP2_iGluR_AMPA 413..794 CDD:270433 61/320 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846635
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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