DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7g and grin2b

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:614 Identity:104/614 - (16%)
Similarity:202/614 - (32%) Gaps:240/614 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 VMTQSSGGQVLLHTYFPYAPGQCNDSQPTRI------------------NMFLGE---------- 194
            ::|.::...:..|...|.:...|.:.|.:|:                  |:...|          
 Frog   294 IITTAASTMLSEHNSIPQSKSSCYNIQESRVYEAHMLKRYLINVTFEGRNLSFSEDGYQMHPKLV 358

  Fly   195 --------SW----KHRD---------------YFPSKLHNLNGCPLIVLARKVSPFL---DLD- 228
                    .|    |::|               |..|:.|......::.|  :.:||:   |:| 
 Frog   359 IILLNQQRKWERVGKYKDRSLKMKYYVWPVFELYPNSEEHKDEHLSIVTL--EEAPFVIVEDVDP 421

  Fly   229 -----------------------EG----QRELRGLEGRLLQELSRRMNFSIQF----SGLQDQL 262
                                   ||    :|..:|....:|:::::.:.|:...    :|...: 
 Frog   422 LSGTCMRNTVPCRKQIRTENRTEEGGNYIKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGK- 485

  Fly   263 KNRTTWTEKQLLQKLVQERIAHLAIGYV---RKRIQYATNLTPVFPHYSNRVVGCLLLNAHNLTS 324
            |...||  ..::.::|.:| |::|:|.:   .:|.:......|    :....:..::..::...|
 Frog   486 KINGTW--NGMIGEVVTKR-AYMAVGSLTINEERSEVVDFSVP----FIETGISVMVSRSNGTVS 543

  Fly   325 LEIWSFPFQALTWICLVFSFLSIS-----------------CLALLHXRGAGDRLALVLAVY--- 369
            ...:..||.|..|:.:....|.:|                 |||.....| |....:..|::   
 Frog   544 PSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPG-GPSFTIGKAIWLLW 607

  Fly   370 --AASLGLPIDPPERPSLQLLFASWLIFGLIVRSMYSALL--FFILRYHLHQ---------RLPG 421
              ..:..:|:..|:..:.:::.:.|..|.:|..:.|:|.|  |.|...::.|         :.|.
 Frog   608 GLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPN 672

  Fly   422 NLQDLTHGDYAAVMGRTTLQDLR-------------EVPSLQD-LLGLKSVIVTSEREEEVLRTL 472
            :......  :..|...:|.:::|             ...|:|| ||.||    |.:.:..:   .
 Frog   673 DFSPAFR--FGTVPNGSTERNIRNNYLEMHSYMVKFNQRSVQDALLSLK----TGKLDAFI---Y 728

  Fly   473 DRCTLR------EGA-----GSHPLF----FGL-ISQD---------ALLHLTQRGHRAGAYHII 512
            |...|.      ||.     ||..:|    :|: |.:|         |:|.|...|.        
 Frog   729 DAAVLNYMAGRDEGCKLVTIGSGKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDGE-------- 785

  Fly   513 PQDVLEQQLAIYL------QKHSHLASHLDHLVMSIRSVGLVHHWAGQMASERYFRSRFLYREKR 571
                :|:..|::|      :|:..::|.||           :.:.||                  
 Frog   786 ----MEELEALWLTGICHNEKNEVMSSQLD-----------IDNMAG------------------ 817

  Fly   572 IRQPDLWAVYILTAGLYLLSLVVFICELL 600
                    |:.:.|....|||:.||.|.|
 Frog   818 --------VFYMLAAAMALSLITFIMEHL 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 11/88 (13%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 75/431 (17%)
NMDAR2_C 837..1449 CDD:402274 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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