DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7g and grin3bb

DIOPT Version :9

Sequence 1:NP_001368933.1 Gene:Ir7g / 31694 FlyBaseID:FBgn0029968 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:553 Identity:110/553 - (19%)
Similarity:170/553 - (30%) Gaps:194/553 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 PMNFY-RNIMQLLYESV--------DTMIVQLVLVELGRPRR----IAGPRTHNLLLVDSLDALL 109
            |::|| .:.:||:..:|        |..::|.::....:|.:    .:|......|...|...|.
Zfish   311 PLDFYISDALQLINRAVTAATVVRPDLALIQNMVNCFDKPNKHELPSSGQYIARFLSNTSFVGLT 375

  Fly   110 -DIEIHTYTAQSDTSEYYFIFLQQRDALIPHDMQGVFAYCWRHQLINCNVMTQSSGGQVLLHTYF 173
             .:.:....::..||....|:..:|||:  .....|....|....:|........|.        
Zfish   376 GPVIVQRNLSRVHTSHKVHIWSLRRDAV--GQPTWVTVGSWEGGRLNVEEQGLWQGS-------- 430

  Fly   174 PYAPGQCNDSQPTRINMFLGESWKHRDYFPSKLHNLNGCPLIVLARKVSPFL------------- 225
              :|.|..:.|..|    .|..|  |..||     ::|..|.|:.....||:             
Zfish   431 --SPRQRTEGQMGR----EGRRW--RAGFP-----VSGSRLRVVTLVEHPFVFTREVDEDGNCPA 482

  Fly   226 ---DLDEGQRELRGL--------EGR------------------LLQELSRRMNFSIQF----SG 257
               .||.|......|        :|.                  ||::||..|||....    .|
Zfish   483 GQYCLDAGTNSSETLDHLYAERAQGNKSFLPPDYSKCCYGYCIDLLEKLSEDMNFEFDLYIVGDG 547

  Fly   258 LQDQLKNRTTWT--EKQLLQKLVQERIAHLAIGYVRKRIQYATNLTPVFPHYSNRVVGCLLLNAH 320
            ....:|. ..||  ...||..:....:...:|...|.::...|:     |.:|.. :|.|:.:..
Zfish   548 KYGAVKG-GQWTGLVGDLLSGVADMAVTSFSINSARSKVIDFTS-----PFFSTS-LGILVRSKD 605

  Fly   321 NLTSLEIWSFPFQALTWICLVFSFLSISCLALL------------HXRGAGDRL-------ALVL 366
            ....:..:.:|.....|:. :|..|.|:.|.|.            |.|   :|:       ||.|
Zfish   606 TAAPIGAFMWPLHWSMWMG-IFVALHITALFLTLYEWKSPFGMTPHGR---NRVKVFSYSSALNL 666

  Fly   367 AVYAASLGLPID--PPERPSLQLLFASWLIFGLIVRSMYSALLFFILRYHLHQRLPGNLQDLTHG 429
            . ||...|..:.  .|:..:.:.|...|.||.|:|.|.|:|.|                      
Zfish   667 C-YAILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLSSYTANL---------------------- 708

  Fly   430 DYAAVMGRTTLQDLREVPSLQDLLGLKSVIVTSEREEEVLRTLDRCTLREGAGSHPLFFGLISQD 494
              ||||                 :|.|                   |..|.:|.|         |
Zfish   709 --AAVM-----------------VGEK-------------------TFEEVSGIH---------D 726

  Fly   495 ALLHLTQRGHRAGAYHIIPQDVLEQQLAIYLQK 527
            |.||...:|.|.|.       |.|.....|::|
Zfish   727 AKLHHPSQGFRFGT-------VRESSAEDYMKK 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7gNP_001368933.1 None
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 22/118 (19%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 77/384 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591702
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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