DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and GLR3.4

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:692 Identity:132/692 - (19%)
Similarity:221/692 - (31%) Gaps:244/692 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 DRVEMTETDTDPPPPSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKR--------------- 119
            |.:|..::||                 :|.|:.......|  .:.|..||               
plant   293 DSMEHVDSDT-----------------MDLLQGVVAFRHY--TIESSVKRQFMARWKNLRPNDGF 338

  Fly   120 NGFFLVIYTGLEDQPMESLKIMFRRLLNMYVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYY 184
            |.:.:..|        :|:.::.|.|...:..|.|:....|..:|...    |.....|:|.|:.
plant   339 NSYAMYAY--------DSVWLVARALDVFFRENNNITFSNDPNLHKTN----GSTIQLSALSVFN 391

  Fly   185 TA--FQDLAAPANGFGLTKPL---------------------FPRKL---TNMHGCEMVVATFEH 223
            ..  |..:....|..|:|.|:                     .||.:   :|..|..:|      
plant   392 EGEKFMKIILGMNHTGVTGPIQFDSDRNRVNPAYEVLNLEGTAPRTVGYWSNHSGLSVV------ 450

  Fly   224 RPYVIIEDDPKT-PGGRSIHGI----------EGLIFRS--------LAERMNFTIKLVEQKDKN 269
            .|..:....|.| ...:.:.||          .|.:|.:        :..|:::|..:  .||||
plant   451 HPETLYSRPPNTSTANQRLKGIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYV--SKDKN 513

  Fly   270 ----RG----------EILP-----------DGNFTGILKMMVDGEVNLTFVCFMYSKARSDLML 309
                ||          |:||           ||.    .....|..|| ..|...:..|..|:.:
plant   514 PPGVRGYCIDVFEAAIELLPYPVPRTYILYGDGK----RNPSYDNLVN-EVVADNFDVAVGDITI 573

  Fly   310 PS--TSYTSFP-------IVLVVPSGGSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITA 365
            .:  |.|..|.       :|:|.|...:.|......:||...:|     ::..||.|..      
plant   574 VTNRTRYVDFTQPFIESGLVVVAPVKEAKSSPWSFLKPFTIEMW-----AVTGGFFLFV------ 627

  Fly   366 LPGLRNLVLGRRNRLPFMG---------MWASLLGGLALYNPQRN----FARYILVMWLLQTLIL 417
              |....:|..|....|.|         .|.|.  ....::.:.|    ..|::|::||...||:
plant   628 --GAMVWILEHRFNQEFRGPPRRQLITIFWFSF--STMFFSHRENTVSSLGRFVLIIWLFVVLII 688

  Fly   418 RAAYTGQLYLLLQDVEMRSPIKSLSEVL-------------AKDY---EFRILPALRTIFKDSMP 466
            .::||..|..:|...::.|.|:.:..::             |::|   |..|||:          
plant   689 NSSYTASLTSILTIRQLTSRIEGIDSLVTSNEPIGVQDGTFARNYLINELNILPS---------- 743

  Fly   467 TTNFHAVLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPD--PLMTAPLT-- 527
                        .:..|:||:.   .::.||         .|||...:..:.|  |.:...||  
plant   744 ------------RIVPLKDEEQ---YLSALQ---------RGPNAGGVAAIVDELPYIEVLLTNS 784

  Fly   528 ---------FYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKR------------VSKRR 571
                     .:.|....|..:.|..:...||:.|:....:..:::|.|            :|   
plant   785 NCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHECSMQIS--- 846

  Fly   572 NLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHRRL 613
            |.|...||:....|:|:.|.....:||.||...:.....|.|
plant   847 NSEDSQLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLL 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 20/105 (19%)
Lig_chan 343..593 CDD:278489 58/303 (19%)
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 32/187 (17%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 16/77 (21%)
Lig_chan 615..869 CDD:365843 58/305 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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