DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and GLUR2

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:666 Identity:132/666 - (19%)
Similarity:223/666 - (33%) Gaps:192/666 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NVSLVYA--LVWAIDNYYGMATSTPLAVVQFPTSRESRRLHND--LIDAALGRSSGTGRI----- 63
            ||..:||  .||.|..          ||.:...||.:....:|  |.....|.|...|.:     
plant   312 NVYGLYAYDTVWIIAR----------AVKRLLDSRANISFSSDPKLTSMKGGGSLNLGALSIFDQ 366

  Fly    64 --QFLLEDDRVEMTETDTDPPPPSGLTGRPIAIWFLDSLRSYFRLEM-YLNQLGSPYKRNGFFLV 125
              |||   |.:..|..       :|:||:   |.||.. ||..:... .:|.:...:::.|:: .
plant   367 GSQFL---DYIVNTNM-------TGVTGQ---IQFLPD-RSMIQPSYDIINVVDDGFRQIGYW-S 416

  Fly   126 IYTGLEDQPMESL--KIMFRRLLNMYVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYYTAFQ 188
            .::||...|.|||  |:..|...|.::.||.              :|.|    .|..|      :
plant   417 NHSGLSIIPPESLYKKLSNRSSSNQHLNNVT--------------WPGG----TSETP------R 457

  Fly   189 DLAAPANGFGLTKPLFPRKLTNMHGCEMVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLA 253
            ....|.||..|...:..|            |:|:       |...:..|...:.|....:|.:  
plant   458 GWVFPNNGRRLRIGVPDR------------ASFK-------EFVSRLDGSNKVQGYAIDVFEA-- 501

  Fly   254 ERMNFTIKLVEQKDKNRGEILPDG----NFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSY 314
                 .:||:.....:...:..||    ||...:..:..|..:...........|:.::..:..|
plant   502 -----AVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPY 561

  Fly   315 TSFPIVLVVPSGGSISPMGRLTRPFRYIIWSCILV-SLIFGFVLICLLKITALPGLRNLVLGRRN 378
            ....:|:|.|............|||...:|:.... .||.|.|:              .:|..|.
plant   562 IESGLVVVAPVTKLNDTPWAFLRPFTPPMWAVTAAFFLIVGSVI--------------WILEHRI 612

  Fly   379 RLPFMG---------MWASLLGGLALYNPQRN----FARYILVMWLLQTLILRAAYTGQLYLLLQ 430
            ...|.|         :|.|.  ....::.:.|    ..|.:|::||...||:.::||..|..:|.
plant   613 NDEFRGPPRKQIVTILWFSF--STMFFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILT 675

  Fly   431 DVEMRSPIKSLSEVLAKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGITVAL 495
            ..::.|||:.:..:::.        :.|..|:......|: .:..|..:..||.....|....|.
plant   676 VQQLNSPIRGVDTLISS--------SGRVGFQVGSYAENY-MIDELNIARSRLVPLGSPKEYAAA 731

  Fly   496 LQ-----------PTVNQF------------DF-RSG-----PNKRHLTVLPDPLMTAPLTFYMR 531
            ||           |.|:.|            :| |||     |....|.:   .:.||       
plant   732 LQNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWGFAFPRDSPLAI---DMSTA------- 786

  Fly   532 PHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIK------RVSKRRNLEPKPLSIWRLSGIFVCC 590
                        |:.:..:|.:.:....::.|..      .||...:.:.|..|.|   |:|:.|
plant   787 ------------ILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFW---GLFLVC 836

  Fly   591 AGLYLVALIVFILEIL 606
            .....:||.::..:|:
plant   837 GISCFIALFIYFFKIV 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 10/65 (15%)
Lig_chan 343..593 CDD:278489 57/298 (19%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 32/134 (24%)
GluR_Plant 466..804 CDD:270404 71/410 (17%)
Lig_chan 590..840 CDD:395014 57/299 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.