DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GLR3.6

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001326369.1 Gene:GLR3.6 / 824311 AraportID:AT3G51480 Length:903 Species:Arabidopsis thaliana


Alignment Length:661 Identity:129/661 - (19%)
Similarity:222/661 - (33%) Gaps:184/661 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 HSAVHNVSLVYAL-----VW----AIDNYYGMATSTPLAVVQFPTSRESRRLHNDLIDAALGRSS 58
            |:..|.....|||     ||    |||:::....:...:.....:......||.|.:....|   
plant   299 HNLTHVGLSTYALYAYDTVWLLAQAIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVFDG--- 360

  Fly    59 GTGRI--QFLLEDDRVEMTETDTDPPPPSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKRNG 121
              |:|  :.:|:.||:             |||||.......:.:...|.:   ||.:|:.|...|
plant   361 --GKIFLESILQVDRI-------------GLTGRMKFTSDRNLVNPAFDV---LNVIGTGYTTIG 407

  Fly   122 FFLVIYTGLEDQP---MESLKIMFRRLLNMYVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVY 183
            ::. .::||...|   ||:.....::|.::.....::.:.| |.|     :.....|.:..:|..
plant   408 YWF-NHSGLSVMPADEMENTSFSGQKLHSVVWPGHSIKIPR-GWV-----FSNNGRHLRIGVPNR 465

  Fly   184 YTAFQDLAAPANGFGLTKPLFPRKLTNMHGC-EMVVATFEHRPYVII---------EDDPKTPGG 238
            |...:.::..:||.          :|..  | ::.:|.....||.:.         .|:|..   
plant   466 YRFEEVVSVKSNGM----------ITGF--CVDVFIAAINLLPYAVPFELVAFGNGHDNPSN--- 515

  Fly   239 RSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKA 303
                              :..::|:.               ||:....| |::.:    ......
plant   516 ------------------SELVRLIT---------------TGVYDAGV-GDITI----ITERTK 542

  Fly   304 RSDLMLPSTSYTSFPIVLVVPSGGSISPMGRLTRPFRYIIWSCILVS-LIFGFVLICLLKITALP 367
            .:|...|   |....:|:|.|.....|......|||...:|.....| ||.|.|:.|        
plant   543 MADFTQP---YVESGLVVVAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWC-------- 596

  Fly   368 GLRNLVLGRRNRLPFMG---------MWASLLGGLALYNPQR-----NFARYILVMWLLQTLILR 418
                  |..::...|.|         .|.|.   ..|:...|     |..|.:|::||...||:.
plant   597 ------LEHKHNDEFRGPPRRQVITTFWFSF---STLFFSHRETTTSNLGRIVLIIWLFVVLIIN 652

  Fly   419 AAYTGQLYLLLQDVEMRSPIKSLSEV-------------LAKDYEFRILPALRTIFKDSMPTTNF 470
            ::||..|..:|...::.||||.:..:             ..:||....|              |.
plant   653 SSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLIHEL--------------NI 703

  Fly   471 HA-----VLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYM 530
            |.     :.|.||....|||....|...|::........|.|  |:....::..........|..
plant   704 HVSRLVPLRSPEEYDKALRDGPGKGGVAAVVDERAYIELFLS--NRCEFGIVGQEFTKNGWGFAF 766

  Fly   531 RPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLS-----GIFVCC 590
            ..:|.....:...|:.:..:|.:.|.|..::.|     |..:|:...:.:.||.     |:||.|
plant   767 PRNSPLAVDVSAAILQLSENGDMQRIRDKWLLR-----KACSLQGAEIEVDRLELKSFWGLFVVC 826

  Fly   591 AGLYLVALIVF 601
            ....::||.|:
plant   827 GVACVLALAVY 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 7/70 (10%)
Lig_chan 343..593 CDD:278489 60/287 (21%)
GLR3.6NP_001326369.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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