DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and grik5

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:440 Identity:92/440 - (20%)
Similarity:179/440 - (40%) Gaps:68/440 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIE-DDPKTPGGRSIHGIEGLIFRSLAERMNFT--IKLVEQKDKNRGEILPDG 277
            :::.|....|||:.: :..:..|.....|....:.|.|::.:.||  ||||:  |...|...|:|
Zfish   430 LIITTILENPYVMRKINYQEFEGNEQYEGFCVDMLRELSDILKFTYRIKLVD--DGLYGAPEPNG 492

  Fly   278 NFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLV--VPSG---GSISPMGRLTR 337
            ::||::..:::.:.:|....|..:..|..::..|..:.:..|.::  |..|   |..|    ...
Zfish   493 SWTGMVGELINRKADLAVAAFTITSEREKVIDFSKPFMTLGISILYRVHIGRKPGYFS----FLD 553

  Fly   338 PFRYIIWSCILVSLIFGFVLICLLKITAL----------PGLR--------NLVLGRRNRLP--- 381
            ||...:|..:|::.:   .:.|:|.::|.          |.||        ...||.....|   
Zfish   554 PFSPAVWLFMLLAYL---AVSCVLFLSARLSPYEWYNPHPCLRERRDLLENQYTLGNSLWFPVGG 615

  Fly   382 FMGMWASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLA 446
            ||...:.::       |:....|.:..:|...|||:.::||..|...|....|..||:|..::..
Zfish   616 FMQQGSEIM-------PRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESPDDLAD 673

  Fly   447 K-DYEFRIL--PALRTIFKDSMPTT-----NFH-------AVLSLEESLYRLRDEDDPGITVALL 496
            : :.::..:  .:..|.|.:|...|     |:.       .|.|.||.:.|:.:..    ...||
Zfish   674 QTNIQYGTIHGGSTMTFFMNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVVNSK----YAFLL 734

  Fly   497 QPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYM 561
            :.|:|::......|   ||.:...|.|......|...|.|:..:...::.:..:..:...::.:.
Zfish   735 ESTMNEYHRSLNCN---LTQIGGLLDTKGYGIGMPLGSPFRDELSLAVLQLQENNRLEILKRRWW 796

  Fly   562 DRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHR 611
            :..| ..|..:...|.|.:..:.||||......::|:.|.::|.:.:..|
Zfish   797 EGGK-CPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFVWSTRR 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 19/64 (30%)
Lig_chan 343..593 CDD:278489 57/285 (20%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389
ANF_receptor 55..392 CDD:279440
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 80/389 (21%)
Lig_chan 558..828 CDD:278489 57/287 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591745
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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