DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grik2

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_062182.1 Gene:Grik2 / 54257 RGDID:2733 Length:908 Species:Rattus norvegicus


Alignment Length:496 Identity:110/496 - (22%)
Similarity:193/496 - (38%) Gaps:116/496 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 PANGFGLTKPL--FPRKLT-NMHGCEMVVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRS 251
            ||:|..:|:..  .|..:| ::....::|.|....|||:.:...|...|..  ..||.   :.|.
  Rat   407 PASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGND--RFEGYCIDLLRE 469

  Fly   252 LAERMNFT--IKLVE------QKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLM 308
            |:..:.||  |:|||      |.|.|       |.:.|:::.::|.:.:|.......:..|..::
  Rat   470 LSTILGFTYEIRLVEDGKYGAQDDVN-------GQWNGMVRELIDHKADLAVAPLAITYVREKVI 527

  Fly   309 LPSTSYTSFPIVLVV--PSG---GSISPMGRLTRP-FRYIIWSCILVSLIFGFVLICLLKITALP 367
            ..|..:.:..|.::.  |:|   |..|.:..|:.. :.|::.:|:.||        |:|      
  Rat   528 DFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVS--------CVL------ 578

  Fly   368 GLRNLVLGR------RNRLP------------------FMGMWASLLGGLALYNPQRNFARYILV 408
                .|:.|      .|..|                  :.|:.|.:..|..|. |:....|.:..
  Rat   579 ----FVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMRQGSELM-PKALSTRIVGG 638

  Fly   409 MWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAKD--YEFRILP--ALRTIFKDSMPTT- 468
            :|...|||:.::||..|...|....|.|||.|..: |||.  .|:..:.  |..|.||.|..:| 
  Rat   639 IWWFFTLIIISSYTANLAAFLTVERMESPIDSADD-LAKQTKIEYGAVEDGATMTFFKKSKISTY 702

  Fly   469 ---------NFHAVL--SLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPL- 521
                     ...:||  |.||.:.|:...|    ...|::.|..:|..:...|...:..|.|.. 
  Rat   703 DKMWAFMSSRRQSVLVKSNEEGIQRVLTSD----YAFLMESTTIEFVTQRNCNLTQIGGLIDSKG 763

  Fly   522 --MTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIK-----RVSKRRNLEPKPLS 579
              :..|:      .|.::.:|...|:.:...|      |::|.:.|     ...:..:.|...|.
  Rat   764 YGVGTPM------GSPYRDKITIAILQLQEEG------KLHMMKEKWWRGNGCPEEESKEASALG 816

  Fly   580 IWRLSGIFVCCAGLYLVALIVFILEIL---TTNHRRLRRAF 617
            :..:.|||:..|...::::.|.:.|.|   ..|.:..:|:|
  Rat   817 VQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSF 857

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 20/72 (28%)
Lig_chan 343..593 CDD:278489 65/297 (22%)
Grik2NP_062182.1 Periplasmic_Binding_Protein_Type_1 34..414 CDD:299141 3/6 (50%)
ANF_receptor 52..395 CDD:279440
Periplasmic_Binding_Protein_Type_2 430..800 CDD:304360 92/414 (22%)
Glutamate binding. /evidence=ECO:0000269|PubMed:15721240, ECO:0000269|PubMed:17115050, ECO:0007744|PDB:1S50, ECO:0007744|PDB:1S7Y, ECO:0007744|PDB:2I0B, ECO:0007744|PDB:2I0C 516..518 0/1 (0%)
Lig_chan 562..831 CDD:278489 66/304 (22%)