DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Gria1

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:462 Identity:92/462 - (19%)
Similarity:177/462 - (38%) Gaps:96/462 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKLVEQKDKNRGEILPDGN 278
            :|.|....|||:::.:.....|...:  ||.   :...:|:.:.::.:|         ||:.||.
  Rat   410 IVTTILEDPYVMLKKNANQFEGNDRY--EGYCVELAAEIAKHVGYSYRL---------EIVSDGK 463

  Fly   279 F----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-M 332
            :          .|::..:|.|..::.......:..|.:::..|..:.|..|.:::.......| :
  Rat   464 YGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGV 528

  Fly   333 GRLTRPFRYIIWSCILVSLIFGFVLICLLKITALP----------GLRNLVLGRRNRLP-FMGMW 386
            .....|..|.||.||:.:.| |..::..|.....|          |.......:.|... |..:|
  Rat   529 FSFLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLW 592

  Fly   387 ASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLA 446
            .||  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:| :|.||
  Rat   593 FSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES-AEDLA 654

  Fly   447 KDYE--------------FR-----ILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGIT 492
            |..|              ||     :...:.|..|.:.|:.   .|.:.||.:.|:|  ...|..
  Rat   655 KQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSV---FVRTTEEGMIRVR--KSKGKY 714

  Fly   493 VALLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMA 546
            ..||:.|:|::..:..|           :|.:....|             ..|..:..::..::.
  Rat   715 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP-------------KGSALRNPVNLAVLK 766

  Fly   547 MMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIFVCCAGLYLVALIVFILEILTT 608
            :...|::.:.: |.:.|:.:..|...:.:.|  .||:..::|:|....|...:|::|.::|....
  Rat   767 LNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYK 831

  Fly   609 NHRRLRR 615
            :....:|
  Rat   832 SRSESKR 838

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 13/74 (18%)
Lig_chan 343..593 CDD:278489 63/298 (21%)
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 81/409 (20%)
Glutamate binding. /evidence=ECO:0000250 492..494 0/1 (0%)