DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and Grik

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001262788.1 Gene:Grik / 42476 FlyBaseID:FBgn0038840 Length:907 Species:Drosophila melanogaster


Alignment Length:602 Identity:115/602 - (19%)
Similarity:194/602 - (32%) Gaps:202/602 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 SGLTGRPIAIWFLDSLRSYFRLEMY------LNQLGSPYKRNGFFLVIYTGLEDQPMESLKIMFR 143
            :|||| ||...: :.||:.|:||:.      :.::|.....:||       .|::|         
  Fly   350 NGLTG-PIRFDY-EGLRTDFKLEVIELAVSGMQKIGQWSGEDGF-------QENRP--------- 396

  Fly   144 RLLNMYVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFP--R 206
                                                            |||:.      |.|  |
  Fly   397 ------------------------------------------------APAHS------LEPDMR 407

  Fly   207 KLTNMHGCEMVVATFEHRPY-VIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNR 270
            .|.|.   ..||.|....|| ::.|...|..|.....|....:...|::::.|:.....|:|...
  Fly   408 SLVNK---SFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDELSKKLGFSYTWRLQEDNKY 469

  Fly   271 GEILP-DGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISPMGR 334
            |.|.| .|.:.|:|:.::|...::..         :||.:.|...:.....:...|.|    :|.
  Fly   470 GGIDPKTGEWNGMLREIIDSRADMGI---------TDLTMTSERESGVDFTIPFMSLG----IGI 521

  Fly   335 LTR--------------PFRYIIWSCILVSLIFGFVLICLLKITALPGLRNLVLGR--------- 376
            |.|              ||...:|  :.:.|.:..|.|.:           .||||         
  Fly   522 LFRKPMKEPPKLFSFMSPFSGEVW--LWLGLAYMGVSISM-----------FVLGRLSPAEWDNP 573

  Fly   377 ----------RNRLPFMG-MWASLLGGLALYN----PQRNFARYILVMWLLQTLILRAAYTGQLY 426
                      .|:..|.. :|.| :|.|....    |:....|.:...|...||||.::||..|.
  Fly   574 YPCIEEPTELENQFSFANCLWFS-IGALLQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLA 637

  Fly   427 LLLQDVEMRSPIKSLSEVLAK-----DYEFRILPALRTIFKDS------------------MPTT 468
            ..|....:.:||....: |:|     :|..:|..|....||:|                  |..|
  Fly   638 AFLTVESLVTPINDADD-LSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTNT 701

  Fly   469 NFHAVLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPH 533
            |...|..:|.|.|..           |::.|..::   ....:..||.:...|........||.:
  Fly   702 NQEGVDRVENSNYAF-----------LMESTTIEY---ITERRCTLTQVGALLDEKGYGIAMRKN 752

  Fly   534 SYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVSKR---------RNLEPKPLSIWRLSGIFVC 589
            ..::..:.:.::.|...|::.:.:..:..     .||         .:.....|.|..|.|:|:.
  Fly   753 WPYRDTLSQAVLEMQEQGLLTKMKTKWWQ-----EKRGGGACSDADEDSGAVALEISNLGGVFLV 812

  Fly   590 CAGLYLVALIVFILEIL 606
            ........:.|.:||::
  Fly   813 MGVGSFFGIFVSLLEMV 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 16/63 (25%)
Lig_chan 343..593 CDD:278489 58/305 (19%)
GrikNP_001262788.1 PBP1_iGluR_Kainate 37..391 CDD:107377 12/42 (29%)
ANF_receptor 53..374 CDD:279440 11/25 (44%)
Periplasmic_Binding_Protein_Type_2 411..781 CDD:304360 82/414 (20%)
Lig_chan 543..816 CDD:278489 58/306 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462834
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.