DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GluRIA

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_476855.1 Gene:GluRIA / 38742 FlyBaseID:FBgn0004619 Length:991 Species:Drosophila melanogaster


Alignment Length:467 Identity:90/467 - (19%)
Similarity:174/467 - (37%) Gaps:99/467 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVIIEDDPKTPGGRSIHG---IEGLIFRSLAERM------NFTIKLVEQKDKNRG- 271
            :|::....||:.::   :...|.|:.|   .||.. :.||:.:      .:.|:||:  |.|.| 
  Fly   481 IVSSLLEEPYLSLK---QYTYGESLVGNDRFEGYC-KDLADMLAAQLGIKYEIRLVQ--DGNYGA 539

  Fly   272 --EILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MG 333
              :..| |.:.|::..::..|.::.......:..|..::..|..:.:..|.:::......:| :.
  Fly   540 ENQYAP-GGWDGMVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTPGVF 603

  Fly   334 RLTRPFRYIIWSCILVSLI-FGFVLICLLKITALPGLRNLVLGRRNRLPFMGMWASLLGGLALYN 397
            ....|....||..:::|.: ..|||..   :|..|.....::.|............::||..|..
  Fly   604 SFLNPLSQEIWISVILSYVGVSFVLYF---VTRFPPYEWRIVRRPQADSTAQQPPGIIGGATLSE 665

  Fly   398 PQRNF----------------------------------ARYILVMWLLQTLILRAAYTGQLYLL 428
            ||.:.                                  .|....:|...|:||.::||..|...
  Fly   666 PQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITPPSIAGRIAAAVWWFFTIILISSYTANLAAF 730

  Fly   429 LQDVEMRSPIKSLSE------------VLAKDYEF--RILPALRTIFKDSMPTTNFHAVLSLEES 479
            |....|.:|||:..:            :....:||  |....|.....:.|.....|:|.:.:|.
  Fly   731 LTVERMVAPIKTPEDLTMQTDVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEG 795

  Fly   480 LYRLRDEDDPGITVALLQPTVNQF--------DFRSGPN---KRHLTVLPDPLMTAPLTFYMRPH 533
            :.|:|  ...|....|::...|::        ..:.|.|   |......|   :.:||       
  Fly   796 IRRVR--QSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATP---IGSPL------- 848

  Fly   534 SYFKRRIDRLIMAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVA 597
               ::|::..::.:..:|.:.|.| |.:.|:.:....:....|..||:..::||:....|..|:|
  Fly   849 ---RKRLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIYYILIGGLLLA 910

  Fly   598 LIVFILEILTTN 609
            :||.|:|....|
  Fly   911 VIVAIMEFFCRN 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/73 (25%)
Lig_chan 343..593 CDD:278489 57/310 (18%)
GluRIANP_476855.1 PBP1_iGluR_AMPA 41..453 CDD:107375
ANF_receptor 53..434 CDD:279440
PBP2_iGluR_AMPA 477..879 CDD:270433 77/422 (18%)
Lig_chan 612..907 CDD:278489 58/312 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462551
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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