DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GluRIIA

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:713 Identity:141/713 - (19%)
Similarity:245/713 - (34%) Gaps:229/713 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLHSAVHNVSL--VYALVWAIDNYYGMATSTPLAVVQF-PTSRESRRLHNDLIDAALGRSSGTGR 62
            :.|...||..|  :|.     :::....||..|.||.. |..|:..||..  :|..||..:   .
  Fly   251 LTHLDTHNSGLRDIYN-----EDFKANITSVRLKVVDANPFERKKTRLTK--VDQILGNQT---M 305

  Fly    63 IQFLLEDDRVEMTETDTD-----PP--PPSGLTGRPIAIWFL-------------DSLRSYFRLE 107
            :..|:.|..|....:..:     .|  ||:...|.. :.|.|             |.:..:|:.|
  Fly   306 LPILIYDAVVLFASSARNVIAAMQPFHPPNRHCGSS-SPWMLGAFIVNEMKTISEDDVEPHFKTE 369

  Fly   108 -MYLNQLGSPYKRNGFFLVIYTGLEDQPM------ESLKIMFRRLLNMYVLNVNVFLQRDGTVHL 165
             |.|::.|   :|..|.|.||....::||      ..:|   :||||:.       |:..||.  
  Fly   370 NMKLDEYG---QRIHFNLEIYKPTVNEPMMVWTPDNGIK---KRLLNLE-------LESAGTT-- 419

  Fly   166 YTYYPYGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCEMVVATFEHRPYVIIE 230
                                  ||.:.            .||:       ..|.|....||.:::
  Fly   420 ----------------------QDFSE------------QRKV-------YTVVTHYEEPYFMMK 443

  Fly   231 DDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKLVEQKDKNRGEILPD-GNFTGILKMMVD--- 288
            :|.:...||..:  ||.   :...|:|.|.|..:.:..  ...|:..|: ..:.||::.::|   
  Fly   444 EDHENFRGREKY--EGYAVDLISKLSELMEFDYEFMIV--NGNGKYNPETKQWDGIIRKLIDHHA 504

  Fly   289 --GEVNLTF-----------VCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISPMGRLT--RP 338
              |..:||.           |.||      .|.:....|.|.|           .|..:..  .|
  Fly   505 QIGVCDLTITQMRRSVVDFTVPFM------QLGISILHYKSPP-----------EPKNQFAFLEP 552

  Fly   339 FR-----YIIWSCILVSLIFGFVLICLLKITALPGLRNLVLGRRNRLP----------FMGMW-- 386
            |.     |:|::.::::|.|.|:               ..|..|..||          ...:|  
  Fly   553 FAVEVWIYMIFAQLIMTLAFVFI---------------ARLSYREWLPPNPAIQDPDELENIWNV 602

  Fly   387 ---ASLLGGLALYN-----PQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSE 443
               ..|:.|..:..     |:....|.:..||....|::.:.||..|...|...:.:|.||||.:
  Fly   603 NNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQD 667

  Fly   444 VLAK-----------------------DYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRD 485
            ::.:                       ||: |....::.....:..:||       :|.:.|:|.
  Fly   668 LIEQDKVHFGSMRGGSTSLFFSESNDTDYQ-RAWNQMKDFNPSAFTSTN-------KEGVARVRK 724

  Fly   486 EDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPL------MTAPLTFYMRPHSYFKRRIDRLI 544
            |  .|....|::.|...::.....:   ||.:.:.:      :..||      .|.::..:...|
  Fly   725 E--KGGYAFLMETTSLTYNIERNCD---LTQIGEQIGEKHYGLAVPL------GSDYRTNLSVSI 778

  Fly   545 MAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEIL 606
            :.:...|.:.:.: |.:.:..........::...|||..|.|:|:..||..|:.:|:.|.|.|
  Fly   779 LQLSERGELQKMKNKWWKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFL 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 15/65 (23%)
Lig_chan 343..593 CDD:278489 52/299 (17%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 39/166 (23%)
ANF_receptor 46..386 CDD:279440 35/148 (24%)
PBP2_iGluR_Kainate 426..796 CDD:270432 79/431 (18%)
Lig_chan 556..828 CDD:278489 53/305 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462641
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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