DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and GluRIIE

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:479 Identity:90/479 - (18%)
Similarity:180/479 - (37%) Gaps:104/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYV-IIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVE--------QKDKNRG 271
            :::.:..::||. ::|...:..|.....|....:.:.||:::.|....|.        .|..|..
  Fly   423 IILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTFVNGGNDYGSYNKSTNES 487

  Fly   272 EILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MGRL 335
                    ||:|:.::.|..:|.......:..|...:..:..:.:..|.::.......:| :...
  Fly   488 --------TGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTF 544

  Fly   336 TRPFRYIIW-----SCILVSLIFGFVL------------ICLLKITALPGLRNLVLGRRNRLPFM 383
            ..||...:|     |.:.|||.| |:|            .|:.:...|.  ....||.       
  Fly   545 MDPFSEEVWWFLGFSFLGVSLSF-FILGRLSPSEWDNPYPCIEEPEELE--NQFTLGN------- 599

  Fly   384 GMW---ASLLGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVL 445
            .:|   .:||...:...|:....|.:...|...|||:.::||..|...|...:.:|.|.|:.: |
  Fly   600 SIWFTTGALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDD-L 663

  Fly   446 AKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYR-----------LRDEDDPGIT------- 492
            |.:.:..:..|     |.:..|.||. :.|.||...:           |.:::..|:.       
  Fly   664 ADNKDGVVYGA-----KKTGSTRNFF-MTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTH 722

  Fly   493 -VALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMR---PHSYFKRRIDRLIMAMMSSGIV 553
             ..|::.|..:::.:...|   |..:.|.|........||   ||   :.:.:..::.:...|::
  Fly   723 YAFLMESTSIEYNTKRECN---LKKIGDALDEKGYGIAMRKDWPH---RGKFNNALLELQEQGVL 781

  Fly   554 ARYRKMYMDRIKR---VSKRRNLEPKPLSIWRLSGIFV------CCAGLY-LVALIVFILEILTT 608
            .:.:..:.:.:..   .:|....:..||.:..|.|:|.      |||.|| :::.::|:::  ..
  Fly   782 EKMKNKWWNEVGTGICATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMK--KA 844

  Fly   609 NHRR------LRRAFNVI---NRY 623
            :|.|      |:..|..:   |.|
  Fly   845 HHYRVPLRDALKEEFQFVIDFNNY 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/70 (20%)
Lig_chan 343..593 CDD:278489 60/300 (20%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377
ANF_receptor 51..382 CDD:279440
PBP2_iGluR_Kainate 419..790 CDD:270432 72/397 (18%)
Lig_chan 551..824 CDD:278489 57/295 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462848
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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