DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Nmdar2

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:500 Identity:101/500 - (20%)
Similarity:189/500 - (37%) Gaps:97/500 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 QDLAAPANGFGLTKPLFPRKLTNMHGCEMVVATFEHRPYVIIEDDPKTP-GGRSI---------- 241
            :|:|.|.|.....:.: |.|.      .:.:...|..||:.:  .|..| .|:.:          
  Fly   484 RDIAWPGNSHAPPQGV-PEKF------HLKITFLEEAPYINL--SPADPVSGKCLMDRGVLCRVA 539

  Fly   242 --------------HGIEGL----------IFRSLAERMNFTIKLVEQKDKNRGEILPDGNFTGI 282
                          |..|..          :....||.:.||.:||..:|...| .|.:|.:.|:
  Fly   540 ADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWG-TLENGKWNGL 603

  Fly   283 LKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPS-GGSISPMGRLTRPFRYIIWSC 346
            :..:|:.:.::.....|.:..|..::..|..:....|.:||.. .|.|||...| .||....|..
  Fly   604 IADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFL-EPFDTASWML 667

  Fly   347 I-LVSLIFGFVLICLLKITALPGL-RNLVLGRRNRLPFMG--------MWASLLGGLALYNPQRN 401
            : :|::.....:|.|.:..:..|. ..|.|...|..|:..        :||.|.......:..|.
  Fly   668 VGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRG 732

  Fly   402 F-ARYILVMWLLQTLILRAAYTGQL--YLL----------LQDVEMRSPIKSLSEVLAKDYEFRI 453
            | :|::..:|.|..::..|.||..|  :::          |.|..:..|...     ...::|..
  Fly   733 FTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSH-----KPSFKFGT 792

  Fly   454 LPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDD--PGITVALLQPTVNQFDFRSGPNKRHLTV 516
            :|...|   ||    ..|...::..:..|..::..  .|: .|:|...::.|.: .|....:|..
  Fly   793 IPYSHT---DS----TIHKYFNVMHNYMRQYNKTSVADGV-AAVLNGNLDSFIY-DGTVLDYLVA 848

  Fly   517 LPDP--LMTAPLTFYMRPH-------SYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVSKRRN 572
            ..:.  |||....:.|..:       |.:.:..::.::...::|.:.|.|:.:|....|..|:.:
  Fly   849 QDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTCRPGKQEH 913

  Fly   573 LEPKPLSIWR-LSGIFVCCAGLYLVALIVFILEILTTNHRRLRRA 616
            ....||::.: ||...:..||:.|.||:: :||.:...:.|.|.|
  Fly   914 KSSDPLALEQFLSAFLLLMAGILLAALLL-LLEHVYFKYIRKRLA 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/96 (19%)
Lig_chan 343..593 CDD:278489 53/284 (19%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 2/5 (40%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 80/429 (19%)
Lig_chan 665..928 CDD:278489 52/276 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463020
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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