DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Gria4

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_058959.2 Gene:Gria4 / 29629 RGDID:61863 Length:902 Species:Rattus norvegicus


Alignment Length:469 Identity:95/469 - (20%)
Similarity:181/469 - (38%) Gaps:108/469 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 MVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRG-----EILP 275
            :||.|....|||:.:.:.:...|...:  ||           :.:.|..:..|:.|     .|:|
  Rat   417 VVVTTIMESPYVMYKKNHEMFEGNDKY--EG-----------YCVDLASEIAKHIGIKYKIAIVP 468

  Fly   276 DGNF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSIS 330
            ||.:          .|::..:|.|:..:.......:..|.:::..|..:.|..|.:::.......
  Rat   469 DGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSK 533

  Fly   331 P-MGRLTRPFRYIIWSCILVSLIFGFVLICLLK-------ITALP--GLRNLVLGRRNRLP---- 381
            | :.....|..|.||.||:.:.|...|::.|:.       .|..|  |..    |..::.|    
  Rat   534 PGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKE----GPSDQPPNEFG 594

  Fly   382 -FMGMWASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKS 440
             |..:|.||  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:|
  Rat   595 IFNSLWFSL--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES 657

  Fly   441 LSEVLAKDYEFRILPALRTIFKDSMPTTNF--HAVLSLEESLYRLRDEDDPGI---TVA------ 494
             :|.|||..|.    |..|:  ||..|..|  .:.:::.|.::......:|.:   |.|      
  Rat   658 -AEDLAKQTEI----AYGTL--DSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARV 715

  Fly   495 ---------LLQPTVNQFDFRSGP-----------NKRHLTVLPDPLMTAPLTFYMRPHSYFKRR 539
                     ||:.|:|::..:..|           :|.:....|             ..|..:..
  Rat   716 RKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATP-------------KGSSLRTP 767

  Fly   540 IDRLIMAMMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIFVCCAGLYLVALIVF 601
            ::..::.:..:|::.:.: |.:.|:.:...|....:.|  .||:..::|:|....|...:|::|.
  Rat   768 VNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVA 832

  Fly   602 ILEILTTNHRRLRR 615
            ::|....:....:|
  Rat   833 LIEFCYKSRAEAKR 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/76 (18%)
Lig_chan 343..592 CDD:459656 64/301 (21%)
Gria4NP_058959.2 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 84/416 (20%)
Blue background indicates that the domain is not in the aligned region.

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