DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grin2c

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_036707.3 Gene:Grin2c / 24411 RGDID:2739 Length:1250 Species:Rattus norvegicus


Alignment Length:658 Identity:141/658 - (21%)
Similarity:239/658 - (36%) Gaps:193/658 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 TDPPP---PSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGS-PYKRNGFFLVIYTG-LEDQP---M 135
            ||.||   |.||.......|.| |||...|..:.:..||: .|:|....|....| ....|   .
  Rat   275 TDAPPAAFPVGLISVVTESWRL-SLRQKVRDGVAILALGAHSYRRQYGTLPAPAGDCRSHPGPVS 338

  Fly   136 ESLKIMFRRLLNM-------------YVLN---VNVFLQR----------DGTVHLYTYYPYGPH 174
            .:.:..:|.|||:             |::.   |.:.|.|          |..| ||..||..|.
  Rat   339 PAREAFYRHLLNVTWEGRDFSFSPGGYLVRPTMVVIALNRHRLWEMVGRWDHGV-LYMKYPVWPR 402

  Fly   175 HCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCEMVVATFEHRPYVIIED-DPKTPG- 237
            :..|..||                         :.:.|   :.|||.|.||:||:|. ||.|.| 
  Rat   403 YSTSLQPV-------------------------VDSRH---LTVATLEERPFVIVESPDPGTGGC 439

  Fly   238 --------GRSIHGI-------------EGL---IFRSLAERMNFTIKLVEQKDKNRGEILPDGN 278
                    .:|.|..             :|.   |.:.||:.:.|:..|....:...|:     .
  Rat   440 VPNTVPCRRQSNHTFSSGDLTPYTKLCCKGFCIDILKKLAKVVKFSYDLYLVTNGKHGK-----R 499

  Fly   279 FTGILKMMVDGEV-----NLTFVCFMYSKARSDLMLPSTSYTSFPI-VLVVPSGGSISPMGRLTR 337
            ..|:...|: |||     ::.......::.||:::..|..:....| |:|..|.|::||...| .
  Rat   500 VRGVWNGMI-GEVYYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVSRSNGTVSPSAFL-E 562

  Fly   338 PFRYIIW-----SCILVSLIFGFVLICLLKIT--------ALPGLRNLVLGRRNRLPFMGMWASL 389
            |:...:|     .|:.|..|..|:......::        ..||..:..:|:...|    :||.:
  Rat   563 PYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQNLTKGKKPGGPSFTIGKSVWL----LWALV 623

  Fly   390 L-GGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAK------ 447
            . ..:.:.||:...::.::::|....:|..|:||..|...:...:....:..||:...:      
  Rat   624 FNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQY 688

  Fly   448 -DYEFRILP------ALRTIFKDSMPTTNFHAV----LSLEESLYRL------------------ 483
             .:.|..:|      .:|:.::| |.|   |.|    .|:|::|..|                  
  Rat   689 PPFRFGTVPNGSTERNIRSNYRD-MHT---HMVKFNQRSVEDALTSLKMGKLDAFIYDAAVLNYM 749

  Fly   484 --RDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFY---MRPHSYFKRRIDRL 543
              :||....:|:              |..|...|           |.|   |:..|::||.||..
  Rat   750 AGKDEGCKLVTI--------------GSGKVFAT-----------TGYGIAMQKDSHWKRAIDLA 789

  Fly   544 IMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTT 608
            ::.::..|...:...:::..|.:..|...:..| |.|..::|:|........:||:||..|.|. 
  Rat   790 LLQLLGDGETQKLETVWLSGICQNEKNEVMSSK-LDIDNMAGVFYMLLVAMGLALLVFAWEHLV- 852

  Fly   609 NHRRLRRA 616
             :.:||.:
  Rat   853 -YWKLRHS 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/87 (21%)
Lig_chan 343..593 CDD:278489 55/303 (18%)
Grin2cNP_036707.3 PBP1_iGluR_NMDA_NR2 41..397 CDD:380601 32/123 (26%)
PBP2_iGluR_NMDA_Nr2 413..813 CDD:270436 89/442 (20%)
NMDAR2_C 850..>925 CDD:402274 3/12 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350132
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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