DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grik4

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:458 Identity:101/458 - (22%)
Similarity:189/458 - (41%) Gaps:65/458 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 ANGFGLTKPLFPRKLT-NMHGCEMVVATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAE 254
            |.|..:...|:...:: ::....:||.|....||::::.:.:...|...:  ||.   :.:.|||
  Rat   395 AEGLSMDSRLYASNISDSLFNTTLVVTTILENPYLMLKGNHQDMEGNDRY--EGFCVDMLKELAE 457

  Fly   255 --RMNFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSF 317
              |.|:.|:||  .|...|....:|.:||::..::..:.:|.......:..|..::..|..:.:.
  Rat   458 ILRFNYKIRLV--GDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTL 520

  Fly   318 PIVLVVPSGGSISPMGR------LTRPFRYIIWSCILVS-LIFGFVLICLLKIT---------AL 366
            .|.::..     ..|||      ...||...:|..:|:: |....||..:.::|         ..
  Rat   521 GISILYR-----VHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCA 580

  Fly   367 PGLRNLVLGRRNRLPFMG--MWASLLGGL----ALYNPQRNFARYILVMWLLQTLILRAAYTGQL 425
            .|..||::.:.:    :|  :|.. :||.    :...|:....|.:..:|...|||:.::||..|
  Rat   581 QGRCNLLVNQYS----LGNSLWFP-VGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANL 640

  Fly   426 YLLLQDVEMRSPIKS---LSEVLAKDYEFRILPALRTIFKDSMPTT-----NFH-------AVLS 475
            ...|....|..||:|   |::..|.:|......:..|.|::|...|     |:.       .|.|
  Rat   641 AAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMYSKQPSVFVKS 705

  Fly   476 LEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRI 540
            .||.:.|:.:.:    ...||:.|:|::..:...|   ||.:...|.|......|...|.|:...
  Rat   706 TEEGIARVLNSN----YAFLLESTMNEYYRQRNCN---LTQIGGLLDTKGYGIGMPVGSVFRDEF 763

  Fly   541 DRLIMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEI 605
            |..|:.:..:..:...::.:.:..| ..|..:...|.|.:..:.||||......:||:.:.:||.
  Rat   764 DLAILQLQENNRLEILKRKWWEGGK-CPKEEDHRAKGLGMENIGGIFVVLICGLIVAIFMAMLEF 827

  Fly   606 LTT 608
            |.|
  Rat   828 LWT 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/66 (27%)
Lig_chan 343..592 CDD:459656 62/279 (22%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 2/6 (33%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 84/390 (22%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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