DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grin3a

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001263284.1 Gene:Grin3a / 242443 MGIID:1933206 Length:1135 Species:Mus musculus


Alignment Length:457 Identity:94/457 - (20%)
Similarity:174/457 - (38%) Gaps:89/457 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVI---IEDDPKTPGGR------------------SIHGIEGLI------------ 248
            ||...|| |:|.   ::|:...|.|:                  |:|.....:            
Mouse   517 VVTLIEH-PFVFTREVDDEGLCPAGQLCLDPMTNDSSILDSLFSSLHSSNDTVPIKFKKCCYGYC 580

  Fly   249 ---FRSLAERMNFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLP 310
               ...|||.|||...|....|...| ...:|::||::..::.|..|:....|..:.|||.::..
Mouse   581 IDLLEQLAEDMNFDFDLYIVGDGKYG-AWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDF 644

  Fly   311 STSYTSFPIVLVVPSGGSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALPGL------ 369
            ::.:.|..:.::|.:..:.:|:|....|..:.:|..|.|:|....:.:.|.:..:..|:      
Mouse   645 TSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAIFLTLYEWKSPFGMTPKGRN 709

  Fly   370 RNLVLGRRNRLPFMGMWASLLGGLALYNPQRNF-ARYILVMWLLQTLILRAAYTGQLYLL----- 428
            ||.|....:.|..  .:|.|.|..|...|.:.: .|:::.:|.:..:...:.||..|..:     
Mouse   710 RNKVFSFSSALNV--CYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEK 772

  Fly   429 -------LQDVEMRSPIK-----SLSEVLAKDYEFRILPALRTIFKD-SMPTTNFHAVLSLEESL 480
                   :.|.::..|.:     ::.|..|:||..:..|.:....:. ::|.|        .:.:
Mouse   773 IYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPAT--------PDGV 829

  Fly   481 YRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIM 545
            ..|:: |...:...::...:..::.....:.:.||| ..|.........:.|:|.....|..||.
Mouse   830 QYLKN-DPEKLDAFIMDKALLDYEVSIDADCKLLTV-GKPFAIEGYGIGLPPNSPLTSNISELIS 892

  Fly   546 AMMSSGIV-ARYRKMYMDRIKRVSKR--RNLEPKPLSIWRLSGIFV-CCAGLYLVALIVFILEIL 606
            ...|.|.: ..:.|.|  ::....||  ...|...:.|...||:|| .|.|        |.|.||
Mouse   893 QYKSHGFMDVLHDKWY--KVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIG--------FGLSIL 947

  Fly   607 TT 608
            ||
Mouse   948 TT 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 19/97 (20%)
Lig_chan 343..593 CDD:278489 53/278 (19%)
Grin3aNP_001263284.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 77/404 (19%)
Lig_chan 676..942 CDD:278489 54/287 (19%)
PPP2CB binding site. /evidence=ECO:0000250|UniProtKB:Q9R1M7 951..987
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846516
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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