DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and glr-7

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001337310.1 Gene:glr-7 / 180547 WormBaseID:WBGene00001618 Length:885 Species:Caenorhabditis elegans


Alignment Length:438 Identity:93/438 - (21%)
Similarity:161/438 - (36%) Gaps:91/438 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 WFLDSLRSYFRLEMYLNQLGSPYK----RNGFFLVIYT-GLEDQPME-SLKIMFRRLL------- 146
            |  |||...|    |:|.:|..::    .|..|.|:.| ..:..|.| ::....|.::       
 Worm   252 W--DSLNVAF----YMNVMGYAFETIRTMNATFDVLPTFTCQTGPSEPNITTTVRDIILNDPAHE 310

  Fly   147 --NMYVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLT 209
              |.....:|:|.| |..|.:|.......|             :| |......|:..|:  .||:
 Worm   311 YGNYTEAGLNMFFQ-DVEVRIYKIDRDRDH-------------ED-ALFNKEVGVWSPI--SKLS 358

  Fly   210 NMHGCEMV---------VATFEHRPYVIIEDDPKTPGGRSIHGIEGL---IFRSLAERMNFTIKL 262
            .|:|...|         |.|....|:|....||.||       .||.   :...:...:|||..:
 Worm   359 VMYGTLQVDVRNLNIFRVVTLIQPPFVQRTGDPDTP-------YEGYCIDLINMIQVEVNFTYTI 416

  Fly   263 VEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFV-CFMYSKARSDLMLPSTSYTSFPIVLVVPSG 326
            .|.:|.:.|.:..:||:.|::..:|.|..::... ..:.::..:|:......|......:::...
 Worm   417 YEVEDGSFGTMDDNGNWNGLIGALVSGSADIALAPLSVMAERENDVDFTVPYYDLVGTTILMKKA 481

  Fly   327 GSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALPGLRNLVLGRRNRLPFMG------- 384
            .....:.:..:...:.:|.||:.:.:|..:|:.:....:.....|      |:..:..       
 Worm   482 DVEYSLFKFMKVLEWPVWLCIVAAYLFTSILLWIFDRFSPYSFTN------NKERYQNDIEKRQF 540

  Fly   385 -----MWASLL------GGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPI 438
                 :|..:.      ||.|   |:....|.:...|.|...|:.|:||..|...|....:..||
 Worm   541 SLKECLWFCMTSLTPQGGGEA---PKNISGRLVAATWWLFGFIIIASYTANLAAFLTVSRLEQPI 602

  Fly   439 KSLSEVLAKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDE 486
            .||.: |||.|:....|     .|.|...|.|..:..:||:.|.:..|
 Worm   603 SSLDD-LAKQYKIEYAP-----IKGSASETYFRRMAEIEETFYNMWKE 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 17/64 (27%)
Lig_chan 343..593 CDD:278489 38/162 (23%)
glr-7NP_001337310.1 Periplasmic_Binding_Protein_Type_1 <102..>220 CDD:324556
PBP2_iGluR_putative 373..767 CDD:270435 61/294 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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