DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and nmr-2

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001256640.1 Gene:nmr-2 / 180002 WormBaseID:WBGene00003775 Length:990 Species:Caenorhabditis elegans


Alignment Length:473 Identity:90/473 - (19%)
Similarity:167/473 - (35%) Gaps:110/473 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 VATFEHRPYVIIED-DP---KTPGGR-------SIHGIEGL------------------IFRSLA 253
            |.|....|::.:.| ||   |.||.:       .:...:|.                  :...||
 Worm   465 VVTLHEPPFIAVSDVDPDTQKCPGNQGSICDWGDVEYTDGAGVKKNRTLLKCCSGYCVDLLNKLA 529

  Fly   254 ERMNFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARS---DLMLPSTSYT 315
            ..:.||..|.:.:|:..| :..:..:.|::..::..:.::.......:..|:   |..||... |
 Worm   530 NDIGFTYTLYKVRDEKWG-LKTENGWNGLIADLMHNKADMCVTSLKLNSERARDIDFSLPFLD-T 592

  Fly   316 SFPIVLVVPSGGSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITAL-------------- 366
            ...|::.:.| |.:||...| .||.|..|..||      ||.|.:..|:..              
 Worm   593 GISIIVKIRS-GVLSPTAFL-EPFEYSTWVIIL------FVCIHVAAISIFLFEWVSPYSFNMQK 649

  Fly   367 --PGLRNLVLGRRNRLPFMGMWASLL-GGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLL 428
              |......|.|...|    :||:|. ..::...|:...:|.:.::|....|...|.||..|...
 Worm   650 YPPPEHKFSLFRSYWL----VWATLFSASVSTDVPKSTVSRLMALVWAAFGLTFLAVYTANLAAF 710

  Fly   429 L------QDVE-MRSPIKSLSEVLAKDYEFRILPALRTIFKDSMPTTNFHAV-----------LS 475
            :      .|:. :..|:.:........:.|..:....|  .::| ..|:|.:           ::
 Worm   711 MITRVQYYDLSGIHDPMLNFPHDQKPPFRFGTVDGGNT--HETM-KRNWHKMHEYVKHNKYFRMN 772

  Fly   476 LEESLYRLRDED-DPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMT----APLTFY------ 529
            :...:..:::|: |..|..|::      .|:.:|.:..      ..|||    |.:|.|      
 Worm   773 ISAGIEAVKNEELDAFIYDAVV------LDYWAGKDAN------CALMTVGKWASMTGYGIGFPK 825

  Fly   530 MRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLY 594
            ..||:..   ::..::.....|.:.|.:..::............:..||.|......||..||..
 Worm   826 NSPHTSL---VNHYMLQYQQKGDLERLQNFWLTGACTPDSHSQTQSAPLGIENFLSAFVLLAGGI 887

  Fly   595 LVALIVFILEILTTNHRR 612
            :|::||...|.:...|.|
 Worm   888 IVSVIVLGFEHIYCMHLR 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 16/90 (18%)
Lig_chan 343..593 CDD:278489 51/295 (17%)
nmr-2NP_001256640.1 rSAM_ocin_1 <54..>108 CDD:274893
Periplasmic_Binding_Protein_type1 102..443 CDD:385651
Periplasmic_Binding_Protein_Type_2 460..860 CDD:389745 77/426 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.