DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and glr-5

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:702 Identity:133/702 - (18%)
Similarity:229/702 - (32%) Gaps:237/702 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NVSLVYALVWAIDNYYGMAT-----STPLAVVQFP------TSRESRR-----------LHNDLI 50
            |:.::.| |:..|..|..|.     |:.:.:...|      :||.||:           :|||| 
 Worm   307 NLKMMEA-VFTFDAVYAFANVFNELSSHMQMNDVPQTLCRKSSRNSRKYQHGRSLIDNIVHNDL- 369

  Fly    51 DAALGRSSGTGRIQFLLEDDRVEMTETDTDPPPPSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGS 115
               .|.|....|                        |.|.|        |:|.|.:.:.|  || 
 Worm   370 ---HGLSGDLRR------------------------LNGHP--------LKSNFSMRIQL--LG- 396

  Fly   116 PYKRNGFFLVIYTG-LED----QPMESLKIMFRRLLNMYVLNVNVFLQRDGTVHLYTYYPYGPHH 175
                       |:| |:|    :|               ..||:|.:..|....|          
 Worm   397 -----------YSGRLDDIGFWEP---------------ATNVHVNMSGDSKAQL---------- 425

  Fly   176 CQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCEMVVATFEHRPYVIIEDDPKTPGGRS 240
             |.::.|    ..:|          ||.|.            |.|...||||:::.:.......|
 Worm   426 -QRNVQV----SDEL----------KPHFR------------VTTIMERPYVMLKKNHYELDANS 463

  Fly   241 IHGIEGLIFRSLAE---RMNFTIKLVEQKDKNRG-EILPDGNFTGILKMMVDGEVNLTFVCFMYS 301
              ..||.....|||   .:.||..:...||...| :...:|::.|::..::.||..:.......:
 Worm   464 --KFEGFCIDLLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGEAEMAVAPLTVN 526

  Fly   302 KARSDLMLPSTSYTSFPIVLVVPSGGSISP-MGRLTRPFRYIIWSCILVSLI---FGFVLICLLK 362
            ..||:.:..:..:.|..|.::........| :.....|..:.||:.|..|:|   .|...:.  .
 Worm   527 YRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFSFLNPLSWQIWTAIATSIITVTLGMYFVA--N 589

  Fly   363 IT--------------------ALPGLRNLVLGRRNRLPFMG-MW---ASLLGGLALYNPQRNFA 403
            :|                    |....:...:...|...|.. :|   :::|.|...:.|:....
 Worm   590 VTPYEWNLNFSCCTAHEPHPAAAFATNQEAPIVMSNNYSFWNTVWYVLSTMLKGGCDFGPRAVST 654

  Fly   404 RYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAKD----------------YEFR 452
            |.:...|.:..|::.:|||..|..:|.......|||:|.::..:.                .|.|
 Worm   655 RLLGGTWWVFYLVIISAYTANLAAVLTVSRPYIPIKNLDDLANQTTISYGTIRGGSTMQFFQESR 719

  Fly   453 ILPALR----TIFKDSMPTTNFHAV---LSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPN 510
            |...::    ...||...|:|...|   ||:..:.              |::.|..:::.:...|
 Worm   720 IAAHVKMWQYMKDKDVFVTSNGKGVERALSMNYAY--------------LMESTSLEYETQQNCN 770

  Fly   511 KRHLTVLPDPLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYM-------------- 561
               ||.:...|.:......:...|.:..||.|.|:.....||:...:..:.              
 Worm   771 ---LTQIGGVLGSKGYGIALAKKSEWTDRISRQILLYAKRGIIEMKKTKWWRSKGAACASTASAV 832

  Fly   562 --DRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEILTTNHR 611
              ||.            .||::.::|:|:......::|.||.|.|::   ||
 Worm   833 KHDRF------------ALSMYNVAGLFITLGVGIVLAAIVVIFELI---HR 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 16/65 (25%)
Lig_chan 343..593 CDD:278489 55/315 (17%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 36/176 (20%)
ANF_receptor 38..377 CDD:279440 18/74 (24%)
PBP2_iGluR_Kainate 438..819 CDD:270432 77/413 (19%)
Lig_chan 568..855 CDD:278489 55/317 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.