DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grin3b

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_579842.2 Gene:Grin3b / 170796 RGDID:621705 Length:1002 Species:Rattus norvegicus


Alignment Length:738 Identity:145/738 - (19%)
Similarity:257/738 - (34%) Gaps:228/738 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ALVWAIDNYYGMATSTPLAVVQFPTSRESRRLHNDLIDAALGRSSGTGRIQFLLEDDRVEMTETD 78
            ||:.|::   |..|..|.||:                   ||.|  |.|...:||          
  Rat   220 ALLGALE---GGGTPVPAAVL-------------------LGCS--TARAHEVLE---------- 250

  Fly    79 TDPPPPSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKRNGFFLVIYTGLE--DQPMESLKIM 141
            ..||.|..|.|.|:....|.:.    .|...:..||.. :::....|::..:|  .|.:.|:.::
  Rat   251 AAPPGPQWLLGTPLPAEALPTT----GLPPGVLALGET-EQHSLEAVVHDMVELVAQALSSMALV 310

  Fly   142 F-RRLLNMYVLNVN-----------------------------VFLQRDGTVHLYTYY------- 169
            . .|.|...|:|.:                             |::.....||:..::       
  Rat   311 HPERALLPAVVNCDDLKTGGSEATGRTLARFLGNTSFQGRTGAVWVTGSSQVHVSRHFKVWSLRR 375

  Fly   170 -PYGPHHCQSSLPVYYT--AFQD-----------LAAPANGFGLTKPLFPRKLTNMHGCEMVVAT 220
             |.|       .|.:.|  ::||           |..|:......:|    ||       .||..
  Rat   376 DPLG-------APAWATVGSWQDGQLDFQPGAAALRVPSPSGTQARP----KL-------RVVTL 422

  Fly   221 FEHRPYVII---EDDPKTPGG-------------------------------RSIHGIEGLIFRS 251
            .|| |:|..   ::|.:.|.|                               |..:|....:...
  Rat   423 VEH-PFVFTRESDEDGQCPAGQLCLDPGTNDSARLDALFAALVNGSVPRTLRRCCYGYCIDLLER 486

  Fly   252 LAERMNFTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTS 316
            |||.:.|..:|....|...| .|.||.:||::..::.|..::....|..:.|||.::..::.:.|
  Rat   487 LAEDLAFDFELYIVGDGKYG-ALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFS 550

  Fly   317 FPIVLVVPSGGSISPMGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALPGL------RNLVLG 375
            ..:.::|.:..:.||:|....|..:.:|..:..:|....:.:.|.:..:..||      |..|..
  Rat   551 TSLGIMVRTRDTASPIGAFMWPLHWSMWVGVFAALHLTALFLTLYEWRSPYGLTPRGRNRGTVFS 615

  Fly   376 RRNRLPFMGMWASLLG-GLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLL----------- 428
            ..:.|..  .:|.|.| .::...|:....|:::.:|.:..|::.::||..|..:           
  Rat   616 YSSALNL--CYAILFGRTVSSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELS 678

  Fly   429 -LQDVEMRSPIK-----SLSEVLAKDYEFRILPALRT-IFKDSMPTTNFHAVLSLEESLYRLRDE 486
             :.|.::..|.:     ::.|..|:.|.....|.:.. :.:.|.|||. |.|..|        ..
  Rat   679 GIHDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTP-HGVAML--------TS 734

  Fly   487 DDPGITVALLQPTVNQFDFRSGPNKRHLTV------------LPDPLMTAPLTFYMRPHSYFKRR 539
            |.|.:...::..::..::.....:.:.|||            ||   ..:|||          ..
  Rat   735 DPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLP---QNSPLT----------SN 786

  Fly   540 IDRLIMAMMSSGIV----ARYRKMYM--DRIKRVSKRRNLEPKPLSIWRLSGIFV-CCAGLYLVA 597
            :...|....|||.:    .::.||..  .|:..|:     |...:.::..||:|| .|.||....
  Rat   787 LSEFISRYKSSGFIDLLHDKWYKMVPCGKRVFAVT-----ETLQMGVYHFSGLFVLLCLGLGSAL 846

  Fly   598 LI-----VFILEILTTNHRRLRR 615
            |.     ||...:|.    |:||
  Rat   847 LTSLGEHVFYRLVLP----RIRR 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 19/95 (20%)
Lig_chan 343..593 CDD:278489 55/293 (19%)
Grin3bNP_579842.2 PBP1_iGluR_NMDA_NR3 21..405 CDD:107372 43/230 (19%)
PBP2_iGluR_NMDA_Nr3 414..808 CDD:270438 82/430 (19%)
Lig_chan 576..842 CDD:278489 55/294 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 882..910
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 951..984
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350125
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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