DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and gria2b

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_068069253.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:944 Species:Danio rerio


Alignment Length:536 Identity:93/536 - (17%)
Similarity:178/536 - (33%) Gaps:170/536 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 LFPRKLTNMHGCEMVVATFEHRPYVIIEDDPKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKD 267
            |||.....:....::|.|....|||:::.:..             :|........:.:.|..:..
Zfish   400 LFPNDTMGLENKTVIVTTILEAPYVMLKKNAD-------------LFMDNERYEGYCVDLAAEIA 451

  Fly   268 KNRG-----EILPDGNF----------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSF 317
            |:.|     :|:.||.:          .|::..:|.|:.::.......:..|.:::..|..:.|.
Zfish   452 KHCGFKYQLKIVGDGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSL 516

  Fly   318 PIVLVVPSGGSISP-MGRLTRPFRYIIWSCILVSLIFGFVLICLLKITALP-------------- 367
            .|.:::.......| :.....|..|.||.||:.:.| |..::..|.....|              
Zfish   517 GISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSPYEWHTEEYEDGQIQ 580

  Fly   368 --------GLRNLVLGRRNRLPFMGMWASLLGGLAL-----YNPQRNFARYILVMWLLQTLILRA 419
                    |:            |..:|.||  |..:     .:|:....|.:..:|...|||:.:
Zfish   581 TNESTNEFGI------------FNSLWFSL--GAFMRQGCDISPRSLSGRIVGGVWWFFTLIIIS 631

  Fly   420 AYTGQLYLLLQDVEMRSPIKSLSEVLAKDYE--------------FR-----ILPALRTIFKDSM 465
            :||..|...|....|.|||:| :|.|||..|              ||     :...:.|..|.:.
Zfish   632 SYTANLAAFLTVERMVSPIES-AEDLAKQTEIAYGTLDSGSTKEFFRRSKIALFDKMWTYMKGAE 695

  Fly   466 PTTNFHAVLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGP-----------NKRHLTVLPD 519
            |:.   .|.:..|.:.|:|  ...|....||:.|:|::..:..|           :|.:....| 
Zfish   696 PSV---FVKTTAEGVMRVR--KSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATP- 754

  Fly   520 PLMTAPLTFYMRPHSYFKRRIDRLIMAMMSSGIVARYR-KMYMDR--------IKRVSKRRNLEP 575
                        ..|..:..::..::.:...|::.:.: |.:.|:        ..:||.|...:.
Zfish   755 ------------KGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKVSPREQSDG 807

  Fly   576 KP-----------------------------------------LSIWRLSGIFVCCAGLYLVALI 599
            .|                                         ||:..::|:|....|...:|::
Zfish   808 TPVNLAVLKLSEQGTLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAML 872

  Fly   600 VFILEILTTNHRRLRR 615
            |.::|....:....:|
Zfish   873 VALVEFCYKSRAEAKR 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 11/76 (14%)
Lig_chan 343..592 CDD:459656 63/355 (18%)
gria2bXP_068069253.1 PBP1_iGluR_AMPA_GluR2 27..397 CDD:380612
PBP2_iGluR_AMPA 410..790 CDD:270433 77/426 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.