DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and Grin2b

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:645 Identity:123/645 - (19%)
Similarity:224/645 - (34%) Gaps:182/645 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ETDTDPPP-PSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKRNGFFLVIYTGLED------- 132
            :|||.|.. |:||.......|                ..|.|.:......:|.|...|       
Mouse   265 DTDTVPSEFPTGLISVSYDEW----------------DYGLPARVRDGIAIITTAASDMLSEHSF 313

  Fly   133 --QPMESL------KIMFRRLLNMYVLNV-----NVFLQRDGTVHLYTYYP-------------- 170
              :|..|.      :|....:||.|::||     |:....||    |..:|              
Mouse   314 IPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSFSEDG----YQMHPKLVIILLNKERKWE 374

  Fly   171 -YGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCE---MVVATFEHRPYVIIED 231
             .|....:|....||                  ::||........|   :.:.|.|..|:||:|.
Mouse   375 RVGKWKDKSLQMKYY------------------VWPRMCPETEEQEDDHLSIVTLEEAPFVIVES 421

  Fly   232 -DP--------------------KT---PG--GRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNR 270
             ||                    ||   ||  .:...|....|.:.:::.:.||..|....:...
Mouse   422 VDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKH 486

  Fly   271 GEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPI-VLVVPSGGSISPMGR 334
            |:.: :|.:.|::..:|.....:.......::.||:::..|..:....| |:|..|.|::||...
Mouse   487 GKKI-NGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAF 550

  Fly   335 LTRPFRYIIWSCILVSLIFGFVLICLLKITAL--------------------PGLRNLVLGRRNR 379
            | .||...:|       :..||::.::...|:                    ||..:..:|:   
Mouse   551 L-EPFSADVW-------VMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGK--- 604

  Fly   380 LPFMGMWASLLGGLA------LYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPI 438
                .:|  ||.||.      :.||:...::.::.:|....:|..|:||..|...:...|....:
Mouse   605 ----AIW--LLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQV 663

  Fly   439 KSLSEV-------LAKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGITVALL 496
            ..||:.       .:..:.|..:|...|    .....|.:|.:......:..|..||     |||
Mouse   664 SGLSDKKFQRPNDFSPPFRFGTVPNGST----ERNIRNNYAEMHAYMGKFNQRGVDD-----ALL 719

  Fly   497 QPTVNQFD----------FRSGPNK--RHLTVLPDPLMTAPLTFY---MRPHSYFKRRIDRLIMA 546
            .....:.|          :.:|.::  :.:|:....:..:  |.|   ::..|.:||::|..|:.
Mouse   720 SLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFAS--TGYGIAIQKDSGWKRQVDLAILQ 782

  Fly   547 MMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEIL 606
            :...|.:.....:::..|.. :::..:....|.|..::|:|........::||.||.|.|
Mouse   783 LFGDGEMEELEALWLTGICH-NEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHL 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/87 (21%)
Lig_chan 343..593 CDD:278489 50/297 (17%)
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 28/142 (20%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 80/429 (19%)
NMDAR2_C 840..1482 CDD:402274 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846446
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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