DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and Grin2b

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_032197.3 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:645 Identity:123/645 - (19%)
Similarity:224/645 - (34%) Gaps:182/645 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ETDTDPPP-PSGLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKRNGFFLVIYTGLED------- 132
            :|||.|.. |:||.......|                ..|.|.:......:|.|...|       
Mouse   265 DTDTVPSEFPTGLISVSYDEW----------------DYGLPARVRDGIAIITTAASDMLSEHSF 313

  Fly   133 --QPMESL------KIMFRRLLNMYVLNV-----NVFLQRDGTVHLYTYYP-------------- 170
              :|..|.      :|....:||.|::||     |:....||    |..:|              
Mouse   314 IPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSFSEDG----YQMHPKLVIILLNKERKWE 374

  Fly   171 -YGPHHCQSSLPVYYTAFQDLAAPANGFGLTKPLFPRKLTNMHGCE---MVVATFEHRPYVIIED 231
             .|....:|....||                  ::||........|   :.:.|.|..|:||:|.
Mouse   375 RVGKWKDKSLQMKYY------------------VWPRMCPETEEQEDDHLSIVTLEEAPFVIVES 421

  Fly   232 -DP--------------------KT---PG--GRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNR 270
             ||                    ||   ||  .:...|....|.:.:::.:.||..|....:...
Mouse   422 VDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKH 486

  Fly   271 GEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPI-VLVVPSGGSISPMGR 334
            |:.: :|.:.|::..:|.....:.......::.||:::..|..:....| |:|..|.|::||...
Mouse   487 GKKI-NGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAF 550

  Fly   335 LTRPFRYIIWSCILVSLIFGFVLICLLKITAL--------------------PGLRNLVLGRRNR 379
            | .||...:|       :..||::.::...|:                    ||..:..:|:   
Mouse   551 L-EPFSADVW-------VMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGK--- 604

  Fly   380 LPFMGMWASLLGGLA------LYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPI 438
                .:|  ||.||.      :.||:...::.::.:|....:|..|:||..|...:...|....:
Mouse   605 ----AIW--LLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQV 663

  Fly   439 KSLSEV-------LAKDYEFRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGITVALL 496
            ..||:.       .:..:.|..:|...|    .....|.:|.:......:..|..||     |||
Mouse   664 SGLSDKKFQRPNDFSPPFRFGTVPNGST----ERNIRNNYAEMHAYMGKFNQRGVDD-----ALL 719

  Fly   497 QPTVNQFD----------FRSGPNK--RHLTVLPDPLMTAPLTFY---MRPHSYFKRRIDRLIMA 546
            .....:.|          :.:|.::  :.:|:....:..:  |.|   ::..|.:||::|..|:.
Mouse   720 SLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFAS--TGYGIAIQKDSGWKRQVDLAILQ 782

  Fly   547 MMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFILEIL 606
            :...|.:.....:::..|.. :::..:....|.|..::|:|........::||.||.|.|
Mouse   783 LFGDGEMEELEALWLTGICH-NEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHL 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 18/87 (21%)
Lig_chan 343..592 CDD:459656 50/296 (17%)
Grin2bNP_032197.3 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 28/142 (20%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 80/429 (19%)
NMDAR2_C 840..1482 CDD:463148 1/2 (50%)

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