DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7c and Grid1

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:479 Identity:87/479 - (18%)
Similarity:174/479 - (36%) Gaps:104/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 GLTKPLFPRKL-TNMHGCEMVVATFEHRPYVIIEDD----PKTPGGRSIHGIEGLIFRSLAERMN 257
            ||...|..|.: :.:.|..:.|.|....|:|::.::    ||...|.||.     :..:||:.:.
Mouse   420 GLNGSLQERPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSID-----VLDALAKALG 479

  Fly   258 FTIKLVEQKDKNRGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLV 322
            |..::.:..|...|..|.:.::.|::..::....:|.......:..|..::..|..|..:.:.::
Mouse   480 FKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGIL 544

  Fly   323 VPSGGSISPMGRLTRPFRYIIWSCILVSL-IFGFVLICLLKITALPGLRNLVLGRRNRLPFMGMW 386
            :........:..|..||.:.:|:||..:: :.|.::..|.:|.|       |..:....|.....
Mouse   545 IKKPEEKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVLNRIQA-------VRSQSATQPRPSAS 602

  Fly   387 ASL-------------LGGLALYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPI 438
            |:|             .||.:..|...  .|.::..|.|.|||:.::||..|...|....|.:||
Mouse   603 ATLHSAIWIVYGAFVQQGGESSVNSVA--MRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPI 665

  Fly   439 KSLSEV---------------------------LAKDYEFRILPALRTIFKD-------SMPTT- 468
            ::..::                           |.:|..|..|  .|||.|:       |.|:. 
Mouse   666 RTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAEL--WRTISKNGGADNCVSNPSEG 728

  Fly   469 -------NFHAVLSLEESLYRLRDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPL 526
                   |:..:..:....|....:||..:                       ||:.:.:.:...
Mouse   729 IRKAKKGNYAFLWDVAVVEYAALTDDDCSV-----------------------TVIGNSISSKGY 770

  Fly   527 TFYMRPHSYFKRRIDRLIMAMMSSGIVARYRKMYMDRIKRVS----KRRNLEPKPLSIWRLSGIF 587
            ...::..|.::....:.|:.:..:|.:...::.:.....|..    .....|.|.|.:...:|:|
Mouse   771 GIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSTQTEGKSLKLHSFAGVF 835

  Fly   588 VCCAGLYLVALIVFILEILTTNHR 611
            ...|...|:|.:|..||:...::|
Mouse   836 CILAIGLLLACLVAALELWWNSNR 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/65 (22%)
Lig_chan 343..593 CDD:278489 53/309 (17%)
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 4/15 (27%)
PBP1_iGluR_delta_1 25..423 CDD:107387 2/2 (100%)
PBP2_iGluR_delta_1 436..806 CDD:270448 70/408 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846301
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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