DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and grin2cb

DIOPT Version :9

Sequence 1:NP_001245572.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:669 Identity:127/669 - (18%)
Similarity:238/669 - (35%) Gaps:192/669 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 GLTGRPIAIWFLDSLRSYFRLEMYLNQLGSPYKR--NGFFLVIYTGLEDQPMESLKIMFRRLLNM 148
            ||.| |..||.:.||           .:|:|...  ..|.:.:.:.:.|:..::|:...|..:.:
Zfish   252 GLLG-PGYIWIVPSL-----------AVGNPEAAPPASFPVGVISIITDRWRKTLRQRVREGVAI 304

  Fly   149 YVLNVNVFLQRDGTVHLYTYYPYGPHHCQSSLPVYYT------------AFQDLAAPANGF---- 197
            .|..|:.|.:..|      :.|.|...|.|.:..|..            ..:||:..::|:    
Zfish   305 IVKGVHSFHKHRG------FIPEGHSDCSSPVKSYANNSLFRHMLNVSWEHKDLSFNSDGYLTNP 363

  Fly   198 ---------------------GLTK---PLFPR-------KLTNMHGCEMVVATFEHRPYVIIED 231
                                 |:.:   |::||       ...|.|   :.|||.|.||:||:|.
Zfish   364 SMVIIALDRENHWDKVGSYEGGILQMRYPVWPRYGSFLEPVSDNRH---LTVATLEERPFVIVES 425

  Fly   232 -DPKT--------PGGRSIHGIEGL------------------IFRSLAERMNFTIKLVEQKDKN 269
             ||.|        |..|..:..|.:                  |.:.|:..:.|:..|....:..
Zfish   426 VDPATGTCVRNTVPCRRQSNRTESIIGHTEPYTKLCCKGFCIDILKKLSRTIKFSYDLYLVTNGK 490

  Fly   270 RGEILPDGNFTGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPI-VLVVPSGGSISPMG 333
            .|::: .|.:.|::..:.....::.......::.||:::..|..:....| |:|..|.|::||..
Zfish   491 HGKMV-RGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSA 554

  Fly   334 RLTRPFRYIIW-----SCILVSLIFGFVLICL--------LKITALPGLRNLVLGRRNRLPFMGM 385
            .| .|:...:|     .|:.|..:..||....        |.....||.....:|:       .:
Zfish   555 FL-EPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVSAKAPGGPTFTIGK-------SV 611

  Fly   386 WASLLGGLA------LYNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEV 444
            |  ||.|:.      :.||:...::.::::|....:|..|:||..|...:...:....:..||:.
Zfish   612 W--LLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDK 674

  Fly   445 LAK-------DYEFRILP--ALRTIFKDSMPTTNFHAV----LSLEESLYRL------------- 483
            ..:       .:.|..:|  :.....:.:.|..:.|.:    ..:||:|..|             
Zfish   675 KFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKYNQKGVEEALNSLKTGKLDAFIYDAA 739

  Fly   484 -------RDEDDPGITVALLQPTVNQFDFRSGPNKRHLTVLPDPLMTAPLTFY---MRPHSYFKR 538
                   :||....:|:              |..|...|           |.|   ::..|.:||
Zfish   740 VLNYMAGKDEGCKLVTI--------------GSGKVFAT-----------TGYGIALQKDSRWKR 779

  Fly   539 RIDRLIMAMMSSGIVARYRKMYMDRIKRVSKRRNLEPKPLSIWRLSGIFVCCAGLYLVALIVFIL 603
            .||..::..:..|...|...:::..|.:..|...:..| |.|..::|:|........::|:||..
Zfish   780 PIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSK-LDIDNMAGVFYMLLVAMGLSLLVFAW 843

  Fly   604 EILTTNHRRLRRAFNVINR 622
            |.|.  :.:||.:.:..:|
Zfish   844 EHLL--YWKLRHSVHKSDR 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_001245572.1 Lig_chan-Glu_bd 225..287 CDD:214911 17/88 (19%)
Lig_chan 343..593 CDD:278489 53/304 (17%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 28/161 (17%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 83/439 (19%)
NMDAR2_C 845..>932 CDD:313729 4/18 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591709
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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