DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7c and gria1

DIOPT Version :10

Sequence 1:NP_572411.1 Gene:Ir7c / 31692 FlyBaseID:FBgn0029966 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_004912781.1 Gene:gria1 / 100127569 XenbaseID:XB-GENE-995621 Length:903 Species:Xenopus tropicalis


Alignment Length:452 Identity:96/452 - (21%)
Similarity:170/452 - (37%) Gaps:100/452 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 VVATFEHRPYVIIEDD-PKTPGGRSIHGIEGLIFRSLAERMNFTIKLVEQKDKNRGEILPDGNF- 279
            :|.|....|||:::.: .:..|.....|....:...:|:.:.|..||         ||:.||.: 
 Frog   411 IVTTILEAPYVMLKKNADQLEGNDRFEGYCVELAAEIAKHVGFKYKL---------EIVKDGKYG 466

  Fly   280 ---------TGILKMMVDGEVNLTFVCFMYSKARSDLMLPSTSYTSFPIVLVVPSGGSISP-MGR 334
                     .|::..:|.|..:|.......:..|.:::..|..:.|..|.:::.......| :..
 Frog   467 ARDSDMKAWNGMVGELVYGRADLAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFS 531

  Fly   335 LTRPFRYIIWSCILVSLIFGFVLICLLKITALP----------GLRNLVLGRRNRLP-FMGMWAS 388
            ...|..|.||.||:.:.| |..::..|.....|          |.......:.|... |..:|.|
 Frog   532 FLDPLAYEIWMCIVFAYI-GVSVVLFLVSRFSPYEWHNEEFEEGKEQPTTDQSNEFGIFNSLWFS 595

  Fly   389 LLGGLAL-----YNPQRNFARYILVMWLLQTLILRAAYTGQLYLLLQDVEMRSPIKSLSEVLAKD 448
            |  |..:     .:|:....|.:..:|...|||:.::||..|...|....|.|||:|..: |||.
 Frog   596 L--GAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESADD-LAKQ 657

  Fly   449 YE-------------------FRILPALRTIFKDSMPTTNFHAVLSLEESLYRLRDEDDPGITVA 494
            .|                   ..:...:.|..:.:.|:.   .|.:.||.:.|:|  ...|....
 Frog   658 TEIAYGTLDSGSTKEFFKRSKIAVFEKMWTYMRSAEPSV---FVKTTEEGMNRVR--KSKGKYAY 717

  Fly   495 LLQPTVNQFDFRSGP-----------NKRHLTVLP--DPLMTAPLTFYMRPHSYFKRRIDRLIMA 546
            ||:.|:|::..:..|           :|.:....|  .||..|               ::..::.
 Frog   718 LLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSPLRGA---------------VNLAVLK 767

  Fly   547 MMSSGIVARYR-KMYMDRIKRVSKRRNLEPK--PLSIWRLSGIF-VCCAGL---YLVALIVF 601
            :...|::.:.: |.:.|:.:..||....:.|  .||:..::|:| :...||   .|||||.|
 Frog   768 LSEQGVLDKLKSKWWYDKGECGSKDSGSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEF 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7cNP_572411.1 Lig_chan-Glu_bd 225..287 CDD:214911 14/72 (19%)
Lig_chan 343..592 CDD:459656 62/300 (21%)
gria1XP_004912781.1 PBP1_iGluR_AMPA_GluR1 26..393 CDD:380613
PBP2_iGluR_AMPA_GluR1 407..788 CDD:270447 81/409 (20%)
Blue background indicates that the domain is not in the aligned region.

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