DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and Grid2

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:606 Identity:123/606 - (20%)
Similarity:200/606 - (33%) Gaps:212/606 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 YGEEMQATLRFL--WR-LSVLN------------VGVVLRPPGDHILMVSYFPFSALHGCQVISA 181
            ||||:...:|.|  |. ::.||            .|||||     ::.|...||      .::|.
  Rat   405 YGEELGRGVRKLGCWNPVTGLNGSLTDKKLENNMRGVVLR-----VVTVLEEPF------VMVSE 458

  Fly   182 NVV---NRYQVGTKRWASQDYFPSKLGNFYGCLLTCATWEDMPYLVWRPDGSGSFVGIEGALLQF 243
            ||:   .:||     ..|.|...: |.|:.|.........|..|  ..|...|::.|:.|.|: |
  Rat   459 NVLGKPKKYQ-----GFSIDVLDA-LSNYLGFNYEIYVAPDHKY--GSPQEDGTWNGLVGELV-F 514

  Fly   244 MAENLNFTVGLYWMNKEEVLATFDESGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFM 308
            ...::..:......::|.|:           :....:.|:|:|                      
  Rat   515 KRADIGISALTITPDRENVV-----------DFTTRYMDYSVG---------------------- 546

  Fly   309 SHIMLVTNLQSAYSAYEKLSFPFTPLLWRAI-GLVLILACLLLMLLVRWRHHHELPRN------- 365
               :|:...:.....:..|: ||...||..| |.||::.  ||:.|:.|.:...|...       
  Rat   547 ---VLLRRAEKTVDMFACLA-PFDLSLWACIAGTVLLVG--LLVYLLNWLNPPRLQMGSMTSTTL 605

  Fly   366 ------------------PYYELLVLTMGGNLEDRWVPQRFPSRLVLLTWLFATLVLRSGYQSGM 412
                              ||..|....|.|    .|             ||||.:|: |.|.:. 
  Rat   606 YNSMWFVYGSFVQQGGEVPYTTLATRMMMG----AW-------------WLFALIVI-SSYTAN- 651

  Fly   413 YQLLRQDTQRNPPQTISEVLAQHFTIQLAEVNEARILASLPEL-RPEQLVYLEGSELQSFPALAQ 476
                               ||...||...|.:    :.||.:| :...:.|  |:.|.|  |:.|
  Rat   652 -------------------LAAFLTITRIESS----IQSLQDLSKQTDIPY--GTVLDS--AVYQ 689

  Fly   477 QSGSSARVAILTPYEYFGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQ--IQHA 539
            .    .|:..|.|:|                  |:.:|:|......|.:.....||..|  ||..
  Rat   690 H----VRMKGLNPFE------------------RDSMYSQMWRMINRSNGSENNVLESQAGIQKV 732

  Fly   540 HTHGFLEHW---TRQYVSAVDEKDESVARIASTSYSTLDGI---DGDP----------SLSESEE 588
            ....:...|   ..:|| |:::.|.|...:.:|......||   .|.|          .|.:| .
  Rat   733 KYGNYAFVWDAAVLEYV-AINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQS-G 795

  Fly   589 DQQV-------------------APVRQNVLSMRELAALFWLILWANLGAVVVFVLELLLPRIKL 634
            |..:                   |..:...|.::.||.:|.::....:.:.::.|||....|.|.
  Rat   796 DMDILKHKWWPKNGQCDLYSSVDAKQKGGALDIKSLAGVFCILAAGIVLSCLIAVLETWWSRRKG 860

  Fly   635 RKILRKMKSDIKKQISKLVRK 655
            .::..| :.|.:..:..|.|:
  Rat   861 SRVPSK-EDDKEIDLEHLHRR 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345
Periplasmic_Binding_Protein_type1 28..429 CDD:415822 9/23 (39%)
PBP2_iGluR_delta_2 440..806 CDD:270449 100/494 (20%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349999
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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