DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7b and grid1b

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:530 Identity:84/530 - (15%)
Similarity:182/530 - (34%) Gaps:147/530 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 MESSSDWDLAEALAQVVANSEMGRFKTLYIYTHTNSQSTGGHLEELLDQVLMIVPNNLQARRLLL 82
            ::.:|...|..:|.:|..|.. |.|.:|  :|...::....:.:.|...:|::.|...|   :.:
Zfish   182 LDQTSRQGLDVSLQRVDRNIS-GVFSSL--FTSMRTEELNRYRDTLRRAILLLSPRGAQ---VFI 240

  Fly    83 QQSME--------YKPYVHAVLALVDGLPSLSAIYARIRATQDL--------------SHTL-IY 124
            .|::|        :..:|:..::..:.|....:...|:...:.:              ||.: ..
Zfish   241 HQAVETNLASKDSHWVFVNEEISDTEILELAHSSLGRMTVVRQIFPLWRDSSVSCMRNSHRISSL 305

  Fly   125 MSMPTDAYGEEMQATLRFLWRLSVLNVGVVLRPPGDHILMVSYFPFSALHGCQVISANVVNRYQV 189
            :..|.:.|.:.::.:..:|:               |.:||::...:..|...:..|...:|..:.
Zfish   306 LCDPQEGYLQSLEVSNLYLY---------------DSVLMLANAFYRKLEDRKWHSMASLNCIRK 355

  Fly   190 GTKRW-------------------ASQDYFPSK---------LG-----NFYGCLLTCATWEDM- 220
            .||.|                   ...|:..:.         ||     .|...:...|||:.: 
Zfish   356 STKPWNGGWSMLETIQKGRITGLTGIMDFMENGSNSHVQFEILGTSFSETFGKDIKRLATWDSVH 420

  Fly   221 ----------------------------PYLVWRPDGSGS---FVGIEGALLQFMAENLNFTVGL 254
                                        |:::...:..|.   :.|....:|:.:|:.|.|...:
Zfish   421 GLNGSLKESRIENGMQGVTVKVVTLLEDPFVMVAENILGQPKRYKGFSIDVLEALAKILGFKYDI 485

  Fly   255 YWMNKEEV---LATFDESGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMSHIMLVTN 316
            |.:...:.   |:....:|.| .|:....||.::......|...:.:.:|:.   :|.:.:.:.:
Zfish   486 YQVADSKYGSQLSNGSWNGMI-GELINKRADLAVSAITITPERENVVDFSKR---YMDYSVGILH 546

  Fly   317 LQSAYSAYEKLSF-----PFTPLLWRAIGLVLILACLLLMLLVRWR----------HHHELPRNP 366
            .:..    ||::.     ||...:|..|...:.:..:|:.||.|.:          ||.....|.
Zfish   547 RKPE----EKINIFSLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNPPGAHHASSMSNS 607

  Fly   367 YYELLVLTMGGNLEDRWVPQRFPS-------RLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNP 424
            .:..:.:..|.     :|.|...|       |:|:.:|...||::.|.|.:.:...|......|.
Zfish   608 LHSAIWIVYGA-----FVQQGGDSVVGSVALRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNT 667

  Fly   425 PQTISEVLAQ 434
            .:|..::..|
Zfish   668 IRTFQDLARQ 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 39/262 (15%)
ANF_receptor 36..400 CDD:279440 34/238 (14%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 45/254 (18%)
Lig_chan 565..840 CDD:278489 24/118 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591146
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.