DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and grik2

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:696 Identity:127/696 - (18%)
Similarity:227/696 - (32%) Gaps:219/696 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 MESSSDWDLAEALAQVVANS--------EMGRFKTLYIYTHTNSQSTGGHLEELLDQVLMIVPNN 74
            :::.|.:::...:.|:.|::        ||.|.|..::......:...|.|::.|...:|     
Zfish   189 IKAPSRYNIRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCGHEMAAGILKQALAMGMM----- 248

  Fly    75 LQARRLLLQQSMEYKPYVHAVLAL--VDGLP-------------------SLSAI-----YARIR 113
                       .||..|:...|.|  :|..|                   .:|:|     ..|::
Zfish   249 -----------TEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENSQVSSIIEKWSMERLQ 302

  Fly   114 ATQDLSHTLIYMSMPTD-------------AYGEEMQATLRFL-------WRLSVLNVGVVLRPP 158
            |.......|:...|.||             |..:..|.|:..|       ||.....:.::....
Zfish   303 APPKPDSGLLDGFMTTDAALMYDAVHVVAVAVQQSPQITVSSLQCNRHKPWRFGNRFMTLIKEAH 367

  Fly   159 GDHILMVSYFPFSALHGCQ------VISANVVNRYQVGTKRWAS----QDYFPSKLGNFYGCL-- 211
            .|.  :.....|:..:|.:      |||.......::||...||    .:....|..|....|  
Zfish   368 WDG--LTGRINFNRTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTENQKGKTANVTDSLSN 430

  Fly   212 --LTCATWEDMPYLVWRPD-----GSGSFVGIEGALLQFMAENLNFTVGLYWMNKEEVLATFDES 269
              |..:|..:.||::::..     |:..|.|....||:.:|..|.|...|..:......|..:.|
Zfish   431 RSLVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELAAILGFGYELRLVEDGRYGAQDESS 495

  Fly   270 GR---IFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMSHIMLVTNLQSAY--------SA 323
            |:   :..|:..|.||.::.     |.|   |.|.:......|...:...:...|        ..
Zfish   496 GQWNGMVRELMDHKADLAVA-----PLA---ITYVREKVIDFSKPFMTLGISILYRKPNGTNPGV 552

  Fly   324 YEKLSFPFTPLLWRAIGLVLI-LACLLLMLL----VRWRHHHELPRNPYYELL------------ 371
            :..|: |.:|.:|..|.|..: ::|:|.::.    ..|.:.|  |.||..:::            
Zfish   553 FSFLN-PLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPH--PCNPDSDVVENNFTLLNSFWF 614

  Fly   372 ----VLTMGGNLEDRWVPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVL 432
                ::..|..|    :|:...:|:|...|.|.||::.|.|.:.:...|..:...:|..:..: |
Zfish   615 GVGALMQQGSEL----MPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADD-L 674

  Fly   433 AQHFTIQLAEVNEARILASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVAILTPYEYFGYFR 497
            |:...|:...|.                   :||.:..|           :...::.|:....| 
Zfish   675 AKQTKIEYGVVE-------------------DGSTMTFF-----------KKTKISTYDKMWEF- 708

  Fly   498 KVHPMSRRLHLVR--------ERIYTQQLAFYV---------RRHSHL----------------- 528
                ||.|.|.|.        ||:.|...||.:         :|:.:|                 
Zfish   709 ----MSSRRHSVMVKSIEEGIERVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKAYGVGTP 769

  Fly   529 ----------VGVLNKQIQHAHTHGFLEHWTRQYVSAVDEKDESVA 564
                      :.:|..| :....|...|.|.|......:|..|:.|
Zfish   770 MGSPYRDKITIAILQLQ-EEGKLHMMKEKWWRGNGCPEEENKEASA 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 42/242 (17%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 78/421 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591843
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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