DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7b and grin2da

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:635 Identity:113/635 - (17%)
Similarity:221/635 - (34%) Gaps:163/635 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 VLALVDGLPSLSAIYARIRATQDLSHTLIYMSMPTDAYGEEMQ---ATLRFLWRL-------SVL 149
            |..|..|..:|...|...|.|....:.::        .|.:.|   ..:||...:       |..
Zfish   344 VSVLTHGAMALRREYGGARGTSFAGNCMM--------DGNQTQRVPGRIRFFSNITLSGRDYSFN 400

  Fly   150 NVGVVLRPPGDHILMVSYFPFSALHGCQVIS--ANVVNRYQVGTKRWASQDYFP-SKLGNFYGCL 211
            |.|.:..|..|   ::||   :|..|.:.:.  .|.|.|.:          |.| |:.|.|...|
Zfish   401 NDGYLANPLLD---VISY---TAGRGWEEVGWWENGVLRLR----------YPPWSRYGPFLKPL 449

  Fly   212 -----LTCATWEDMPYLVWRP--DGSGSFV-----------------GIEGA----------LLQ 242
                 |...|.|:.|:::..|  .|:||.:                 ||:..          :|:
Zfish   450 DDSQHLRVVTLEERPFVIVEPADPGTGSCIRDSVPCRLPLNNSMVVEGIQSMKHCCKGFCIDVLK 514

  Fly   243 FMAENLNFTVGLYWMNKEEVLATFDESGRIFD--------EIFGHHADFSLGGFHFKPSAGSEIP 299
            .:|:.:.||..||       |.|....|:..|        |:....||.::|...........:.
Zfish   515 RLAKIVGFTYDLY-------LVTNGRHGKNIDGQWNGMVGEVVSKRADMAIGSLTINEERSEVVE 572

  Fly   300 YSQSTYYFMSHIMLVTNLQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLMLLVRWRHHHELPR 364
            :  |..:..:.|.::.:..:...:......|::|.:|    :::.:.||.::.:..:......|.
Zfish   573 F--SVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVW----VMMFVMCLSVVAVTVFIFEFFSPV 631

  Fly   365 NPYYELL---------VLTMGGNLEDRW-------VPQRFP----SRLVLLTWLFATLVLRSGYQ 409
            . |...|         ..|:|.::...|       ||...|    |::::|.|.|..::..:.|.
Zfish   632 G-YNRSLQSGKTAGGSKFTIGKSIWLLWALVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYT 695

  Fly   410 SGMYQLLRQDTQRNPPQTISEVLAQHFTIQLAEVNEARILASLPELRPEQLVYLEGSELQSFPAL 474
            :.:...:.|:...:....:|:...||.|.|...:.    ..::|....|:.:......:..:...
Zfish   696 ANLAAFMIQEEYIDTVSGLSDKKFQHPTEQYPPLR----FGTVPNGSTEENIRSNYPNMHQYMVR 756

  Fly   475 AQQSGSSARVAILTPYEYFGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSH---LVGVLNKQI 536
            ..|.|....:..|...:...:                 ||...:..|:.|...   ::.:.:.::
Zfish   757 NNQRGVEDAIENLKTGKLDAF-----------------IYDAAVLNYMARKDEGCKVMTIGSGKV 804

  Fly   537 QHAHTHGFLEH----WTRQYVSAV-----DEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQV 592
            .....:|...|    |.|....|:     |::.:.:.|:      .|.||..:..:.        
Zfish   805 FATTGYGVALHKNSRWKRPLDLALLQLVGDDEIDMLERL------WLSGICHNDKIE-------- 855

  Fly   593 APVRQNVLSMRELAALFWLILWANLGAVVVFVLELLLPRIKLRKILRKMK 642
              |..:.|.:..:|.:|:::|.|...:::||..|.|: ..|||..|.:.:
Zfish   856 --VMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLV-YWKLRHCLGRTR 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373 25/120 (21%)
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 70/439 (16%)
HisJ <507..>590 CDD:223904 16/91 (18%)
Lig_chan 605..877 CDD:278489 47/313 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591781
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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