DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and gria3b

DIOPT Version :10

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:494 Identity:88/494 - (17%)
Similarity:172/494 - (34%) Gaps:115/494 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 LTCATWEDMPYLVWRP-----DGSGSFVGIEGALLQFMAENLNFTV-------GLYWMNKEEVLA 264
            :...|..:.||::::.     :|:..:.|....|...:|:::....       |.|.....|   
Zfish   415 IVVTTIMEAPYVMYKKNHMHLEGNEKYEGYCVDLASEIAKHVGIKYRLSIVMDGKYGARDPE--- 476

  Fly   265 TFDESGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEK 326
            |...:|.:.:.::| .||.::............|.:|:.   |||   .||:....:|....:..
Zfish   477 TKSWNGMVGELVYG-RADIAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSF 537

  Fly   327 LSFPFTPLLWRAIGLVLILACLLLMLLVRWRHHH------------ELPRNP-----YYELLVLT 374
            |. |....:|..|....|...::|.|:.|:..:.            :.|.:|     .:..|..:
Zfish   538 LD-PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFS 601

  Fly   375 MGGNLEDRW--VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ--- 434
            :|..::...  .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.::..::..|   
Zfish   602 LGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEI 666

  Fly   435 -HFTIQLAEVNE--ARILASLPELRPEQLVYLEGSELQSF-----PALAQQSGSSARVAIL---T 488
             :.|:......|  .|...::.|   :...|::.:|...|     ..:|:...|..:.|.|   |
Zfish   667 AYGTLDSGSTKEFFRRSKIAVYE---KMWSYMKSAEPSVFAKTTPDGVARVRKSKGKFAFLLEST 728

  Fly   489 PYEYFGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQY- 552
            ..||....:....|.     |...:.::.......:.|.|...:|..:...:..|.|:....:: 
Zfish   729 MNEYIEQRKPCDTMK-----VGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWW 788

  Fly   553 -------VSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFW 610
                   ....|.||::.|                                   ||:..:|.:|:
Zfish   789 YDKGECGSGGGDSKDKTSA-----------------------------------LSLSNVAGVFY 818

  Fly   611 LILWANLG-AVVVFVLELL------LPRIKLRKILRKMK 642
             ||...|| |::|.::|..      ..|:||.|..:..|
Zfish   819 -ILVGGLGLAMMVALIEFCYKSRAEAKRLKLEKNAQNYK 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_type1 25..398 CDD:471960
PBP2_iGluR_AMPA 412..794 CDD:270433 68/394 (17%)
Blue background indicates that the domain is not in the aligned region.

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