DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and GluRIIC

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:766 Identity:134/766 - (17%)
Similarity:246/766 - (32%) Gaps:240/766 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ILSC-CSLVASTMESSSDWDLAEALAQVVANSEMGRFKTLYIYTHTNSQSTGGHLEEL-LDQVLM 69
            :|.| .:::...:.||:::.|.            |::..:::   ||.::...||||| .|....
  Fly   214 VLDCEPNMLVELLNSSTEFGLT------------GQYNHIFL---TNLETYTDHLEELAADNETF 263

  Fly    70 IVPNNLQARRLLLQQSMEYKPY--VHAVLALVDGLPSLSAIYARIRATQDLSHTLIY-------- 124
            .|  |:.|.|||:  :.:..||  .:..:...|.:     :|......:.|.|.||:        
  Fly   264 AV--NITAARLLV--NPDPPPYSLPYGYVTQRDNI-----VYESSDPPRTLIHDLIHDALQLFAQ 319

  Fly   125 ------------MSMPT-----DAYGEEMQATLRFLWRL--------------SVL--------- 149
                        |.:|.     .|.|....|..|:|.||              |:|         
  Fly   320 SWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQRI 384

  Fly   150 NVGVVLRPPGDHILMVSYFPFSALHGCQV-ISANVVNRYQVGTKRWASQDYFPSKLGNFYGCLLT 213
            ...:.:..|.|.|.:..:.|...:....| :.|.....|:|.|           ::|        
  Fly   385 TFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVAT-----------RIG-------- 430

  Fly   214 CATWEDMPYLVWRP-------DGSGSFVGIEGALLQFMAENLNFTVGLYWMNKEEVLATFDESGR 271
                  .||..:..       .|:..:.|....|:..:|.::.|.. ::....::.....|:..:
  Fly   431 ------PPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEY-VFVPVADQQYGKLDKETK 488

  Fly   272 ----IFDEIFGHHADFSLGGFHF----KPSAGSEIPYSQ----STYYFMSHIMLVTNLQSAYSAY 324
                |..||..:.|...:.....    |.:....:|:.|    ...|...|   |.....||.| 
  Fly   489 QWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPH---VEKTLDAYLA- 549

  Fly   325 EKLSFPFTPLLWRAIGLVLILACLLLMLLVR-----WRHHHELPRNPYYELL------------- 371
                 ||...:|..|.:.:.:...|..::.|     |.:.|...|:|  |:|             
  Fly   550 -----PFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDP--EVLENQWRIHNTGWLT 607

  Fly   372 ---VLTMGGNLEDRWVPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLA 433
               ::|.|.::    :|:....|:...||....:::.:.|.:.:...|...........:.::.|
  Fly   608 VASIMTAGCDI----LPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSA 668

  Fly   434 Q----HFTIQ-------LAEVNEA--RILASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVA 485
            |    ..||.       ||:.||.  |:..:|.. ..:...|.: ..|:....:.:..|....:.
  Fly   669 QKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMN-NDDPSAYTK-DNLEGVDRVRKNRGDYMFLM 731

  Fly   486 ILTPYEY--------------FGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQI 536
            ..|..||              ||                |:.|...:.|.....|:|...:.|..
  Fly   732 ETTTLEYHREQNCDLRSVGEKFG----------------EKHYAIAVPFGAEYRSNLSVAILKLS 780

  Fly   537 QHAHTHGFLEHWTRQYVSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEE-DQQVAPVRQNVL 600
            :....:...:.|.:                             :|:.|..|| |....|    .:
  Fly   781 ERGELYDLKQKWWK-----------------------------NPNASCFEEPDPDATP----DM 812

  Fly   601 SMRELAALFWLILWANLGAVVVFVLELL--LPRIKLRKILRKMKSDIKKQI 649
            :..||..:|:.:....|.|.::.:.|.|  :.::.|.:.| ..|...||:|
  Fly   813 TFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERL-TFKDAFKKEI 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 42/213 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/88 (19%)
PBP2_iGluR_Kainate 423..794 CDD:270432 70/429 (16%)
Lig_chan 554..828 CDD:278489 52/330 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462684
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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