DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and Nmdar2

DIOPT Version :10

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:594 Identity:92/594 - (15%)
Similarity:181/594 - (30%) Gaps:205/594 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 PTDAYGEEMQATLRFLWRLSVLNV--------------GVVLRPPGDHILMVSYFPFSALHGCQV 178
            |.....|:....:.||.....:|:              ||:.|...||.:...            
  Fly   495 PPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAAD------------ 547

  Fly   179 ISANVVNRYQVGTKRWASQDYFPSKLGNFYGCLLTCATWEDMPYLVWRPDGSGSFVGIEGALLQF 243
            |.....:|.:                 :||.|   |               ||..:.    ||:.
  Fly   548 IDVGQAHRNE-----------------SFYQC---C---------------SGFCID----LLEK 573

  Fly   244 MAENLNFTVGLYWMNKEEVLATFD------ESGR---IFDEIFGHHADFSLGGFHFKPSAGSEIP 299
            .||.|.||.        |::...|      |:|:   :..::.....|..|..........:.:.
  Fly   574 FAEELGFTY--------ELVRVEDGKWGTLENGKWNGLIADLVNRKTDMVLTSLMINTEREAVVD 630

  Fly   300 YSQSTYYFMSHIMLVTNLQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLMLLVRWRHHHELPR 364
            :|:.  :..:.|.:|...::...:......||....|..:|:|.|.|...::.|..|..    |.
  Fly   631 FSEP--FMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLS----PS 689

  Fly   365 NPYYELLVLTMGGNL--------EDRWV--------------PQRFPSRLVLLTWLFATLVLRSG 407
            .  |::.:.....|:        ...|:              |:.|.||.:...|....:|..:.
  Fly   690 G--YDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAI 752

  Fly   408 YQSGM--YQLLRQDTQR-----------------------NPPQTISEVLAQHFTIQ---LAEVN 444
            |.:.:  :.:.|::...                       .|.......:.::|.:.   :.:.|
  Fly   753 YTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYFNVMHNYMRQYN 817

  Fly   445 EARI---LASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVAILTPYEYFGYFRKVHPMSRRL 506
            :..:   :|::.....:..:| :|:.|.   .|..|......:.:.:.|...||           
  Fly   818 KTSVADGVAAVLNGNLDSFIY-DGTVLD---YLVAQDEDCRLMTVGSWYAMTGY----------- 867

  Fly   507 HLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQYVSAVDEKDESVARIASTSY 571
                      .|||  .|:|..|.:.||::.....:|.||...|.:::       ...|.....:
  Fly   868 ----------GLAF--SRNSKYVQMFNKRLLEFRANGDLERLRRYWMT-------GTCRPGKQEH 913

  Fly   572 STLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLILWANLGAVVVFVLELLLPRIKLRK 636
            .:     .||                  |::.:..:.|.|:    :..:::..|.|||..:..:.
  Fly   914 KS-----SDP------------------LALEQFLSAFLLL----MAGILLAALLLLLEHVYFKY 951

  Fly   637 ILRKM-KSD 644
            |.::: |.|
  Fly   952 IRKRLAKKD 960

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..485 CDD:380601
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 77/506 (15%)
Blue background indicates that the domain is not in the aligned region.

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