DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and Gria3

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001106213.1 Gene:Gria3 / 29628 RGDID:70958 Length:888 Species:Rattus norvegicus


Alignment Length:426 Identity:80/426 - (18%)
Similarity:150/426 - (35%) Gaps:101/426 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 SGRIFDEIFGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEKLSFP 330
            :|.:.:.::| .||.::............|.:|:.   |||   .||:....:|....:..|. |
  Rat   485 NGMVGELVYG-RADIAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSFLD-P 544

  Fly   331 FTPLLWRAIGLVLILACLLLMLLVR-----W--RHHHELPRNP-----------YYELLVLTMGG 377
            ....:|..|....|...::|.|:.|     |  ..::|.||:|           .:..|..::|.
  Rat   545 LAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGA 609

  Fly   378 NLEDRW--VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ----HF 436
            .::...  .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.::..::..|    :.
  Rat   610 FMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYG 674

  Fly   437 TIQLAEVNE--ARILASLPELRPEQLVYLEGSELQSF-----PALAQQSGSSARVAIL---TPYE 491
            |:......|  .|...::.|   :...|::.:|...|     ..:|:...|..:.|.|   |..|
  Rat   675 TLDSGSTKEFFRRSKIAVYE---KMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNE 736

  Fly   492 YFGYFRKVHPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQY---- 552
            |....:....|.     |...:.::.......:.|.|...:|..:...:..|.|:....::    
  Rat   737 YIEQRKPCDTMK-----VGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDK 796

  Fly   553 ----VSAVDEKDESVARIASTSYSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLIL 613
                ....|.||::.|                                   ||:..:|.:|: ||
  Rat   797 GECGSGGGDSKDKTSA-----------------------------------LSLSNVAGVFY-IL 825

  Fly   614 WANLG-AVVVFVLELLL------PRIKLRKILRKMK 642
            ...|| |::|.::|...      .|:||.|..:..|
  Rat   826 VGGLGLAMMVALIEFCYKSRAESKRMKLTKNTQNFK 861

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Gria3NP_001106213.1 PBP1_iGluR_AMPA_GluR3 29..400 CDD:107382
ANF_receptor 40..383 CDD:279440
PBP2_iGluR_AMPA 416..799 CDD:270433 60/326 (18%)
Glutamate binding 502..504 0/1 (0%)
Lig_chan 548..829 CDD:278489 56/324 (17%)