DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and Grin3b

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:460 Identity:87/460 - (18%)
Similarity:150/460 - (32%) Gaps:144/460 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 LLQFMAENLNFTVGLYWMNKEEVLATFDESGR---IFDEIFGHHADFSLGGFHFKPSAGSEIPYS 301
            ||:.:||:|.|...||.:...:..|..|  ||   :..::....|..::..|....:....:.::
Mouse   563 LLERLAEDLAFDFELYIVGDGKYGALRD--GRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFT 625

  Fly   302 QSTYYFMSHIMLVTNLQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLMLLVRWRHHHEL-PR- 364
            ..  :|.:.:.::...:...|......:|....:|..:...|.|..|.| .|..||..:.| || 
Mouse   626 SP--FFSTSLGIMVRTRDTASPIGAFMWPLHWSMWVGVFAALHLTALFL-TLYEWRSPYGLTPRG 687

  Fly   365 -------------NPYYELLVLTMGGNLEDRWVPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLL 416
                         |..|.:|.    |.......|:....|.::..|....|::.|.|.:.:..::
Mouse   688 RNRGTVFSYSSALNLCYAILF----GRTVSSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVM 748

  Fly   417 RQDTQRNPPQTISEVLAQH------------FTIQLAEVNEARILASLPELR-----------PE 458
            ..|      :|..|:...|            |........||.|.||.||:.           |.
Mouse   749 VGD------KTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPH 807

  Fly   459 QLVYL--EGSELQSF----PALAQQSGSSARVAILT---PYEYFGYFRKVHPMSRRLHLVRERIY 514
            .:..|  :..:|.:|    ..|..:....|...:||   |:...||         .:.|.:....
Mouse   808 GVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGY---------GIGLPQNSPL 863

  Fly   515 TQQLAFYVRRHSHLVGVLNKQIQHAHTHGFL----EHWTR-----QYVSAVDEKDESVARIASTS 570
            |..|:.::.|:.              :.||:    :.|.:     :.|.||.|            
Mouse   864 TSNLSEFISRYK--------------SSGFIDLLHDKWYKMVPCGKRVFAVTE------------ 902

  Fly   571 YSTLDGIDGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLI-------LWANLGAVVVFVLELL 628
              ||.                        :.:..|:.||.|:       |..:||..|.:  .|:
Mouse   903 --TLQ------------------------MGVYHLSGLFVLLCLGLGSALLTSLGEHVFY--RLV 939

  Fly   629 LPRIK 633
            ||||:
Mouse   940 LPRIR 944

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 67/362 (19%)
Lig_chan 656..922 CDD:365843 61/337 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846668
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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