DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and Grik3

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:705 Identity:126/705 - (17%)
Similarity:237/705 - (33%) Gaps:238/705 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 SMEYKPYVHAVLAL-------VDGLPSLSAI-----YARIRATQDLSHTLIYMSMPTDA------ 131
            :::.:||.::.:.|       ||. |.:|||     ..|::|.......|:...|.|||      
Mouse   266 ALDLEPYRYSGVNLTGFRILNVDN-PHVSAIVEKWAMERLQAAPRAESGLLDGVMMTDAALLYDA 329

  Fly   132 -------YGEEMQATLRFL-------WRLSVLNVGVVLRPPGDHILMVSYFPFSALHG------- 175
                   |....|.|:..|       ||..           |..:..:....:..|.|       
Mouse   330 VHIVSVCYQRAPQMTVNSLQCHRHKAWRFG-----------GRFMNFIKEAQWEGLTGRIVFNKT 383

  Fly   176 --------CQVISANVVNRYQVGTKRWASQDYF----------PSKLGNFYGCLLTCATWEDMPY 222
                    ..:||.......:||.  |:..|..          |:...:.....|...|..:.|:
Mouse   384 SGLRTDFDLDIISLKEDGLEKVGV--WSPADGLNITEVAKGRGPNVTDSLTNRSLIVTTVLEEPF 446

  Fly   223 LVWRPD-----GSGSFVGIEGALLQFMAENLNFTVGLYWMNKEEVLATFDESGR---IFDEIFGH 279
            :::|..     |:..|.|....||:.:|..|.|:..:..:...:..|. |:.|:   :..|:..|
Mouse   447 VMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQ-DDKGQWNGMVKELIDH 510

  Fly   280 HADFSLGGF---HFKPSA----------GSEIPY------SQSTYYFMSHIMLVTNLQSAYSAYE 325
            .||.::...   |.:..|          |..|.|      :.|.:.|::                
Mouse   511 KADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLN---------------- 559

  Fly   326 KLSFPFTPLLWRAIGLVLI-LACLLLMLL----VRWRHHHELPRNPYYELL-------------- 371
                |.:|.:|..:.|..: ::|:|.::.    ..|...|  |.||..|::              
Mouse   560 ----PLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAH--PCNPGSEVVENNFTLLNSFWFGM 618

  Fly   372 --VLTMGGNLEDRWVPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ 434
              ::..|..|    :|:...:|::...|.|.||::.|.|.:.:...|..:...:|..:..: ||:
Mouse   619 GSLMQQGSEL----MPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADD-LAK 678

  Fly   435 HFTIQLAEVNEARILASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVAILTPYEYFGYFRKV 499
            ...|:...|.:.           ..:.:.:.|::.:|                            
Mouse   679 QTKIEYGAVKDG-----------ATMTFFKKSKISTF---------------------------- 704

  Fly   500 HPMSRRLHLVRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGF---LEHWTRQYVSAVDEKDE 561
                       |:::    ||...:.|.||....:.||...|..:   :|..|.:|::   :::.
Mouse   705 -----------EKMW----AFMSSKPSALVKNNEEGIQRTLTADYALLMESTTIEYIT---QRNC 751

  Fly   562 SVARIASTSYSTLDGID---GDP--------SLSESEEDQ-----------QVAPVRQN----VL 600
            ::.:|.....|...||.   |.|        .|...|||:           ...|..:|    .|
Mouse   752 NLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSGCPEEENKEASAL 816

  Fly   601 SMRELAALFWLILWANLG-AVVVFVLELLLPRIKLRKILRKMKSDIKKQISKLVR 654
            .::::..:| ::|.|.|. :|:|.|.|.:   .||||...:.:......::..:|
Mouse   817 GIQKIGGIF-IVLAAGLVLSVLVAVGEFI---YKLRKTAEREQRSFCSTVADEIR 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 31/164 (19%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 78/452 (17%)
Glutamate binding. /evidence=ECO:0000250 690..692 0/12 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846662
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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