DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7b and Grid1

DIOPT Version :9

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:486 Identity:89/486 - (18%)
Similarity:154/486 - (31%) Gaps:159/486 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 TNSQSTGGHL----EELLDQVLMIVPNNLQARRLLLQQSMEYKPYVHAVLALVDGLPSLSAIYAR 111
            ||..|...|.    ||:.|..::.:.::...|..:::|.                .||.......
Mouse   246 TNLASKDSHWVFVNEEISDPEILDLVHSALGRMTVVRQI----------------FPSAKDNQKC 294

  Fly   112 IRATQDLSHTLIYMSMPTDAYGEEMQATLRFLWRLSVLNVGVVLRPPGDHILMVSYFPFSALH-- 174
            :|....:|..|   ..|.:.|.:.:|.:..:|:               |.:||::    :|.|  
Mouse   295 MRNNHRISSLL---CDPQEGYLQMLQISNLYLY---------------DSVLMLA----NAFHRK 337

  Fly   175 -----GCQVISANVVNRYQVGTKRW---------------------------ASQDYFPSK-LGN 206
                 ...:.|.|.:.:   .||.|                           :|..|...: ||.
Mouse   338 LEDRKWHSMASLNCIRK---STKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFEILGT 399

  Fly   207 FYG-----CLLTCATWEDMP----YLVWRPDGSGSFVGIEGALLQ----------FMAENL---- 248
            .|.     .:...|||:...    .|..||.||    .::|..|:          .:|||:    
Mouse   400 TYSETFGKDMRKLATWDSEKGLNGSLQERPMGS----RLQGLTLKVVTVLEEPFVMVAENILGQP 460

  Fly   249 ----NFTV----------GLYWMNKEEVLATFDESGR------------IFDEIFGHHADFSLGG 287
                .|::          |.    |.|:....|  ||            :..|:....||.::..
Mouse   461 KRYKGFSIDVLDALAKALGF----KYEIYQAPD--GRYGHQLHNTSWNGMIGELISKRADLAISA 519

  Fly   288 FHFKPSAGSEIPYSQSTYYFMSHIMLVTNLQSAYSAYEKLSFPFTPLLWRAIGLVLILACLLLML 352
            ....|...|.:.:|: .|...|..:|:...:...|.: .|..||...:|..|...:.:..:|:.:
Mouse   520 ITITPERESVVDFSK-RYMDYSVGILIKKPEEKISIF-SLFAPFDFAVWACIAAAIPVVGVLIFV 582

  Fly   353 LVRWR----HHHELPRNPYYELL----------VLTMGGNLEDRWVPQRFPSRLVLLTWLFATLV 403
            |.|.:    .....||......|          .:..||......|..    |:|:.:|...||:
Mouse   583 LNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQQGGESSVNSVAM----RIVMGSWWLFTLI 643

  Fly   404 LRSGYQSGMYQLLRQDTQRNPPQTISEVLAQ 434
            :.|.|.:.:...|......||.:|..::..|
Mouse   644 VCSSYTANLAAFLTVSRMDNPIRTFQDLSKQ 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 41/234 (18%)
PBP1_iGluR_delta_1 25..423 CDD:107387 36/217 (17%)
PBP2_iGluR_delta_1 436..806 CDD:270448 48/251 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846309
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.