DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7b and gria3

DIOPT Version :10

Sequence 1:NP_572410.2 Gene:Ir7b / 31690 FlyBaseID:FBgn0029965 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001106494.1 Gene:gria3 / 100127683 XenbaseID:XB-GENE-1010483 Length:887 Species:Xenopus tropicalis


Alignment Length:487 Identity:93/487 - (19%)
Similarity:173/487 - (35%) Gaps:119/487 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PYLVWRP-----DGSGSFVGIEGALLQFMAENLNFTVGLYWMNKEEVLATFDE----SGRIFDEI 276
            ||::.:.     ||:..:.|....|...:|:::.....|..:...:..|...|    :|.:.:.:
 Frog   428 PYVMKKKNHELLDGNDKYEGYCVDLASEIAKHVGIKYKLSIVEDGKYGARDPETKIWNGMVGELV 492

  Fly   277 FGHHADFSLGGFHFKPSAGSEIPYSQSTYYFMS---HIMLVTNLQSAYSAYEKLSFPFTPLLWRA 338
            :| .||.::............|.:|:.   |||   .||:....:|....:..|. |....:|..
 Frog   493 YG-RADIAVAPLTITLVREEVIDFSKP---FMSLGISIMIKKPQKSKPGVFSFLD-PLAYEIWMC 552

  Fly   339 IGLVLILACLLLMLLVR-----WRHHHEL-----PRNP--------YYELLVLTMGGNLEDRW-- 383
            |....|...::|.|:.|     | |..:.     |:||        .:..|..::|..::...  
 Frog   553 IVFAYIGVSVVLFLVSRFSPYEW-HLEDTDEARDPQNPPDPPNEFGIFNSLWFSLGAFMQQGCDI 616

  Fly   384 VPQRFPSRLVLLTWLFATLVLRSGYQSGMYQLLRQDTQRNPPQTISEVLAQHFTIQLAEVNEARI 448
            .|:....|:|...|.|.||::.|.|.:.:...|..:...:|.:: :|.||:...|....::    
 Frog   617 SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES-AEDLAKQTEIAYGTLD---- 676

  Fly   449 LASLPELRPEQLVYLEGSELQSFPALAQQSGSSARVAILTPYE-YFGYFRKVHP----MSRRLHL 508
                           .||..:.|        ..:::|:   || .:.|.:...|    .:....:
 Frog   677 ---------------SGSTKEFF--------RRSKIAV---YEKMWSYMKSAEPSVFTKTTDDGV 715

  Fly   509 VRERIYTQQLAFYVRRHSHLVGVLNKQIQHAHTHGFLEHWTRQYVSAVDEKDESVARIASTSYST 573
            .|.|....:.||.      |...:|:.|:......     |.:....:|.|...||....::..|
 Frog   716 ARVRKSKGKFAFL------LESTMNEYIEQRKPCD-----TMKVGGNLDSKGYGVATPKGSALGT 769

  Fly   574 --------------LDGI-------DGDPSLSESEEDQQVAPVRQNVLSMRELAALFWLILWANL 617
                          ||.:       .|:....:|....     :.:.||:..:|.:|: ||...|
 Frog   770 PVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKD-----KTSALSLSNVAGVFY-ILVGGL 828

  Fly   618 G-AVVVFVLELLL------PRIKLRKILRKMK 642
            | |::|.::|...      .|:||.|..:..|
 Frog   829 GLAMMVALIEFCYKSRAESKRMKLTKNAQNFK 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7bNP_572410.2 None
gria3NP_001106494.1 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610
PBP2_iGluR_AMPA 416..798 CDD:270433 76/417 (18%)
Blue background indicates that the domain is not in the aligned region.

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