DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPA and ca4b

DIOPT Version :9

Sequence 1:NP_001284986.1 Gene:CARPA / 31687 FlyBaseID:FBgn0029962 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001159683.1 Gene:ca4b / 553246 ZFINID:ZDB-GENE-080815-5 Length:304 Species:Danio rerio


Alignment Length:290 Identity:80/290 - (27%)
Similarity:132/290 - (45%) Gaps:27/290 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FIACSAIVLLCSSEVLSSWEEWWTYDGIS-------GPSFWGLINPQWNMCNKGRRQSPIDVVPD 74
            |:..|.:.:||.   |:|..||.....::       ||..|..:..   .|. ..:||||::|.:
Zfish     3 FLCLSTLAILCR---LASSAEWCYQTQVTCSNHSCIGPDDWATVAA---ACG-NNKQSPINIVTN 60

  Fly    75 KLLFDPYLRPLHID--KHKVSGTLHNTGQSLVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGT 137
            |...|..|.|:...  :.:::..:.|.|.::...:....|    |:|..|...|:.:::::|:|.
Zfish    61 KASTDSRLTPVQFTDYQERLNAVIVNNGHTVQINLPDRAK----INGANLGSTYKAQQLHLHWGK 121

  Fly   138 ENVRGSEHFIQGYSFPGEIQIYGFNKELYHNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITST 202
            ....||||.|.|..||.|:.:... ||.|:::.:|...|.|:..|....:..|..|.....|.::
Zfish   122 NGGPGSEHTIDGEKFPMELHVVHI-KEEYNSLEQAVGDSSGVAVLGFFYEESENANKNYDAIINS 185

  Fly   203 FNKVLYRGFSTPIRHISVRSLLPN--TDHYITYEGSTTHPGCWESTVWIIVNKPIYITKQELYQL 265
            ...:.:...:..:..||:..|:||  .|.|..||||.|.|||.|:.||.|..|.|.::|::|...
Zfish   186 LTNITHPESNAELGAISLDMLIPNEDLDKYFRYEGSLTTPGCAEAVVWTIFEKTIPLSKEQLSAF 250

  Fly   266 RRLMQGSESTPKAPLGNNARPVQSLHHRTV 295
            ..|    ..:..|.:.|..||:|....|.|
Zfish   251 SNL----TFSDGAAMVNTFRPIQLRFDRPV 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPANP_001284986.1 alpha_CARP_X_XI_like 46..300 CDD:239395 72/254 (28%)
ca4bNP_001159683.1 alpha_CA_IV_XV_like 50..278 CDD:239391 68/236 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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