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Protein Alignment CARPA and Ca5a

DIOPT Version :9

Sequence 1:	NP_001284986.1	Gene:	CARPA / 31687	FlyBaseID:	FBgn0029962	Length:	333	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	267	Identity:	75/267 - (28%)
Similarity:	123/267 - (46%)	Gaps:	20/267 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    39 WTYDGISGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVS-GTLHNTGQS 102
            || ..:|.|.              |.:||||::.....::||.|.||.:.....| ..|.|||
  Rat    51 WT-GPVSSPG--------------GTQQSPINIQWTDSVYDPKLAPLRVSYDAASCRYLWNTG-- 98

  Fly   103 LVFRVD-KDTKQHVNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYGFNKELY 166
            ..|:|: .|:.:...||||||...|:.::.:.|:|..:..||||.:.|:::|.|:.:..:|...|
  Rat    99 YFFQVEFDDSCEESGISGGPLGNHYRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVHWNSMKY 163

  Fly   167 HNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHISVRSLLPNTDHYI 231
            .|..:|.....|:..:.:.:::| ..:..|:.:.....:|.::.....:.......|||....|.
  Rat   164 ENYKKATTGENGLAVIGVFLKLG-AHHEALQRLVDILPEVRHKDTQVTMGPFDPSCLLPACRDYW 227

  Fly   232 TYEGSTTHPGCWESTVWIIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHRTVR 296
            ||.||.|.|...||..||:...||.::..:|...|.|:.......:..:.||.||:|.|..|.||
  Rat   228 TYPGSLTTPPLAESVTWIVHKMPIEVSPSQLSTFRTLLFSGRGEDEEVMVNNFRPLQPLRGRNVR 292

  Fly   297 TNIDFKR 303
            ::....|
  Rat   293 SSFQVPR 299

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.