DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CARPA and Ca9

DIOPT Version :9

Sequence 1:	NP_001284986.1	Gene:	CARPA / 31687	FlyBaseID:	FBgn0029962	Length:	333	Species:	Drosophila melanogaster
Sequence 2:	NP_001101426.1	Gene:	Ca9 / 313495	RGDID:	1306426	Length:	437	Species:	Rattus norvegicus

Alignment Length:	265	Identity:	68/265 - (25%)
Similarity:	122/265 - (46%)	Gaps:	21/265 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    39 WTYDGISGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVSG----TLHNT 99
            |:|.|.       |:.||.:....||.|||:|:..:...|...|:||.:..:::..    :|.|.
  Rat   120 WSYGGT-------LLWPQVSPACAGRFQSPVDIRLELTSFCRTLQPLELLGYELQSLPELSLCNN 177

  Fly   100 GQSLVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYGFNKE 164
            |.::...:....|..:    || ...|:..::::|:||.:..||||.:.|:.||.||.:...: .
  Rat   178 GHTVQLTLPPGLKMVL----GP-GQEYRALQLHLHWGTSDHPGSEHTVNGHRFPAEIHVVHLS-T 236

  Fly   165 LYHNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHISVRSLLP-NTD 228
            .:..:.||..:..|:..|:..:|.....|.....:.|...::...|....|..:.|.:||| :..
  Rat   237 AFSELHEALGRPGGLAVLAAFLQESPEENSAYEQLLSHLEEIAEEGSKIEIPGLDVSALLPSDLS 301

  Fly   229 HYITYEGSTTHPGCWESTVWIIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHR 293
            .|..||||.|.|.|.:..:|.:.|:.:.::.::|:.|...:.|...   :.|..|.|..|.|:.|
  Rat   302 RYYRYEGSLTTPPCSQGVIWTVFNETVKLSAKQLHTLSVSLWGLRD---SRLQLNFRATQPLNGR 363

  Fly   294 TVRTN 298
            |:..:
  Rat   364 TIEAS 368

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CARPA	NP_001284986.1	alpha_CARP_X_XI_like	46..300	CDD:239395	65/258 (25%)
Ca9	NP_001101426.1	alpha_CA	128..370	CDD:294017	64/250 (26%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG3338
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1377476at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820